Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4184_RS01985 Genome accession   NZ_CP038441
Coordinates   430995..431570 (+) Length   191 a.a.
NCBI ID   WP_139744800.1    Uniprot ID   A0AAP4J776
Organism   Aeromonas media strain T0.1-19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425995..436570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4184_RS01960 (E4184_02005) glnK 426151..426489 (-) 339 WP_025328566.1 P-II family nitrogen regulator -
  E4184_RS01965 (E4184_02010) - 426890..427891 (+) 1002 WP_163135519.1 sensor domain-containing diguanylate cyclase -
  E4184_RS01970 (E4184_02015) - 428034..428453 (+) 420 WP_106885607.1 hypothetical protein -
  E4184_RS01975 (E4184_02020) - 428559..429778 (+) 1220 WP_171275302.1 IS3 family transposase -
  E4184_RS01980 (E4184_02025) - 429839..430477 (-) 639 WP_171277169.1 LuxR C-terminal-related transcriptional regulator -
  E4184_RS01985 (E4184_02030) ssb 430995..431570 (+) 576 WP_139744800.1 single-stranded DNA-binding protein Machinery gene
  E4184_RS01990 (E4184_02035) - 431728..432498 (+) 771 WP_171275303.1 transporter substrate-binding domain-containing protein -
  E4184_RS23170 (E4184_02040) - 432547..432669 (-) 123 WP_081843838.1 hypothetical protein -
  E4184_RS01995 (E4184_02045) yjbD 433021..433305 (+) 285 WP_162519186.1 DUF3811 domain-containing protein -
  E4184_RS02000 (E4184_02050) cspA 433699..433911 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  E4184_RS02005 (E4184_02055) - 434218..436173 (+) 1956 WP_171275304.1 ligand-gated channel protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=354319 E4184_RS01985 WP_139744800.1 430995..431570(+) (ssb) [Aeromonas media strain T0.1-19]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=354319 E4184_RS01985 WP_139744800.1 430995..431570(+) (ssb) [Aeromonas media strain T0.1-19]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGTGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGGGTGGCCAGGAGCGTTATACCACAGAAGTGCTGGTCGACAGTTT
CACCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCTGGCCAGGGCATGGGCGGTCAACAGTCCCAGGGCA
ACTGGGGCCAGCCGCAACAGGCCGCCCCCCAGCAAGCGATGCAGCGCCCGGCCGCAGCCCCGCAGCAGAATATGCAGCCA
CAGGGTGGTTACAGTCGTCCGGCCCAGCAGCCGCAGTCTGCACCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGA
CGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.231

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45

Multiple sequence alignment