Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4T63_RS24990 Genome accession   NZ_CP038438
Coordinates   5408300..5408818 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A031FLF5
Organism   Pseudomonas fluorescens strain LBUM677     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5403300..5413818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS24955 (E4T63_24955) - 5403752..5404333 (+) 582 WP_227698851.1 YjfI family protein -
  E4T63_RS24960 (E4T63_24960) - 5404351..5405049 (+) 699 WP_007966153.1 PspA/IM30 family protein -
  E4T63_RS24970 (E4T63_24970) - 5405245..5405895 (+) 651 WP_095139068.1 DUF2491 family protein -
  E4T63_RS24975 (E4T63_24975) - 5405911..5406336 (+) 426 WP_027614247.1 DUF350 domain-containing protein -
  E4T63_RS24980 (E4T63_24980) - 5406354..5407025 (+) 672 WP_135296665.1 DUF1190 domain-containing protein -
  E4T63_RS24985 (E4T63_24985) - 5407028..5408185 (+) 1158 WP_135296666.1 glutathionylspermidine synthase family protein -
  E4T63_RS24990 (E4T63_24990) ssb 5408300..5408818 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  E4T63_RS24995 (E4T63_24995) - 5408828..5410225 (-) 1398 WP_135296667.1 MFS transporter -
  E4T63_RS25000 (E4T63_25000) uvrA 5410417..5413251 (+) 2835 WP_027614251.1 excinuclease ABC subunit UvrA -
  E4T63_RS25005 (E4T63_25005) bfr 5413315..5413779 (-) 465 WP_003228714.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=354295 E4T63_RS24990 WP_007966163.1 5408300..5408818(-) (ssb) [Pseudomonas fluorescens strain LBUM677]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=354295 E4T63_RS24990 WP_007966163.1 5408300..5408818(-) (ssb) [Pseudomonas fluorescens strain LBUM677]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAAAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCTCCGCAACAGCGTCCAGCCCCGGCTCCACAGCAGGCTGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5

Multiple sequence alignment