Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | E4T63_RS23780 | Genome accession | NZ_CP038438 |
| Coordinates | 5162389..5163261 (+) | Length | 290 a.a. |
| NCBI ID | WP_096795219.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain LBUM677 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5157389..5168261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4T63_RS23755 (E4T63_23755) | - | 5157579..5157875 (+) | 297 | WP_115988878.1 | DUF2845 domain-containing protein | - |
| E4T63_RS23760 (E4T63_23760) | - | 5158142..5158498 (-) | 357 | WP_025108814.1 | BON domain-containing protein | - |
| E4T63_RS23765 (E4T63_23765) | - | 5158798..5159238 (-) | 441 | WP_098965660.1 | pilin | - |
| E4T63_RS23770 (E4T63_23770) | pilB | 5159467..5161167 (+) | 1701 | WP_097089222.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| E4T63_RS23775 (E4T63_23775) | pilC | 5161170..5162387 (+) | 1218 | WP_098965663.1 | type II secretion system F family protein | Machinery gene |
| E4T63_RS23780 (E4T63_23780) | pilD | 5162389..5163261 (+) | 873 | WP_096795219.1 | A24 family peptidase | Machinery gene |
| E4T63_RS23785 (E4T63_23785) | coaE | 5163258..5163881 (+) | 624 | WP_135296584.1 | dephospho-CoA kinase | - |
| E4T63_RS23790 (E4T63_23790) | yacG | 5163878..5164075 (+) | 198 | WP_003228296.1 | DNA gyrase inhibitor YacG | - |
| E4T63_RS23795 (E4T63_23795) | - | 5164082..5164297 (-) | 216 | WP_003228298.1 | hypothetical protein | - |
| E4T63_RS23800 (E4T63_23800) | - | 5164363..5165052 (-) | 690 | WP_135296585.1 | energy-coupling factor ABC transporter permease | - |
| E4T63_RS23805 (E4T63_23805) | - | 5165170..5165796 (+) | 627 | WP_003228301.1 | DUF1780 domain-containing protein | - |
| E4T63_RS23810 (E4T63_23810) | - | 5165793..5166320 (+) | 528 | WP_098965671.1 | MOSC domain-containing protein | - |
| E4T63_RS23815 (E4T63_23815) | - | 5166372..5166545 (+) | 174 | WP_003228304.1 | DUF3094 family protein | - |
| E4T63_RS23820 (E4T63_23820) | - | 5166609..5167907 (+) | 1299 | WP_003228306.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32107.38 Da Isoelectric Point: 7.9854
>NTDB_id=354291 E4T63_RS23780 WP_096795219.1 5162389..5163261(+) (pilD) [Pseudomonas fluorescens strain LBUM677]
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVVLLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVVLLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=354291 E4T63_RS23780 WP_096795219.1 5162389..5163261(+) (pilD) [Pseudomonas fluorescens strain LBUM677]
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGTTGGGTCTGGTGGTCGGCAG
TTTCCTCAACGTACTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGATGTCCTCGGTC
TGCCAAGCGAAACACCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACTTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTCGCCTGGCATCTGGGTTTCGGCTGGCCGGCGGGCC
TGTTGATCGTCCTTACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
AGCCGGTTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCGATTGTCGGGGTGGTTCTACTGCGTCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGTTGGGTCTGGTGGTCGGCAG
TTTCCTCAACGTACTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGATGTCCTCGGTC
TGCCAAGCGAAACACCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACTTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTCGCCTGGCATCTGGGTTTCGGCTGGCCGGCGGGCC
TGTTGATCGTCCTTACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
AGCCGGTTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCGATTGTCGGGGTGGTTCTACTGCGTCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.546 |
97.241 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
49.813 |
92.069 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
49.813 |
92.069 |
0.459 |
| pilD | Neisseria gonorrhoeae MS11 |
48.519 |
93.103 |
0.452 |