Detailed information NTG0354075

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GPA00_RS03300
• Genome accession: NZ_CP046629
• Coordinates: 656010..657008 (+)
• Length: 332 a.a.
• NCBI ID: WP_021141399.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain CNU G6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 651010..662008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPA00_RS03270 (GPA00_03270)	-	651127..651576 (+)	450	WP_027968249.1	DUF523 domain-containing protein	-
GPA00_RS03275 (GPA00_03275)	purE	651576..652064 (+)	489	WP_021141395.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
GPA00_RS03280 (GPA00_03280)	purK	652051..653142 (+)	1092	WP_021141396.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
GPA00_RS03285 (GPA00_03285)	-	653164..653388 (+)	225	WP_157327509.1	phosphoribosylaminoimidazole carboxylase	-
GPA00_RS03290 (GPA00_03290)	purB	653479..654777 (+)	1299	WP_024344772.1	adenylosuccinate lyase	-
GPA00_RS03295 (GPA00_03295)	comR	654934..655839 (+)	906	WP_198362634.1	helix-turn-helix domain-containing protein	Regulator
GPA00_RS03300 (GPA00_03300)	ruvB	656010..657008 (+)	999	WP_021141399.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GPA00_RS03305 (GPA00_03305)	-	657218..657649 (+)	432	WP_074484049.1	low molecular weight protein-tyrosine-phosphatase	-
GPA00_RS03310 (GPA00_03310)	-	657666..658046 (+)	381	WP_074451189.1	MORN repeat-containing protein	-
GPA00_RS03315 (GPA00_03315)	-	658043..659836 (+)	1794	WP_157327513.1	acyltransferase family protein	-
GPA00_RS03325 (GPA00_03325)	thrC	660189..661673 (+)	1485	WP_157327515.1	threonine synthase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37462.01 Da
• Isoelectric Point: 4.6212

>NTDB_id=354075 GPA00_RS03300 WP_021141399.1 656010..657008(+) (ruvB) [Streptococcus equinus strain CNU G6]
MSRILDNDIMGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNGETSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAVEDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHLGYPYIEK

Nucleotide

• Length: 999 bp

>NTDB_id=354075 GPA00_RS03300 WP_021141399.1 656010..657008(+) (ruvB) [Streptococcus equinus strain CNU G6]
ATGAGCAGAATTTTAGACAATGATATTATGGGTGATGAAGAGTTTGTGGAACGTACGCTTCGTCCTCAATATTTAAAAGA
ATATATTGGACAGGATAAGGTAAAAAATCAGCTGAAAATTTTTATTGAAGCTGCTAAATTACGAGATGAGTCATTGGACC
ATGTGCTGTTGTTTGGCCCTCCAGGGTTAGGTAAGACGACAATGGCATTTGTGATTGCTAATGAATTAGGGGTGAATTTA
AAACAAACATCTGGACCGGCTATTGAAAAGGCTGGTGATTTGGTTGCGATTTTGAATGACTTAGAACCAGGTGATGTGTT
GTTTATTGATGAAATTCACCGTATGCCAATGGCAGTAGAAGAAGTGCTTTATAGCGCTATGGAAGATTTCTATATTGATA
TTATGATTGGTAATGGTGAGACTAGTCGTAGTGTCCATTTAGAATTGCCACCTTTTACTTTGATTGGTGCGACAACGCGT
GCAGGAATGCTTTCAAATCCATTGCGTGCACGTTTTGGTATCACTGGTCACATGGAATACTATGCTGTTGAAGATTTGAC
AGAAATTGTAGAACGTACGGCTGATATTTTTGAGATGGAGATTGTCCATGAAGCCGCACAAGAATTAGCGCGACGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTGTTGAAACGTGTGCGTGATTATGCCCAAATCATGGGCGATGGTATCATCACA
AAAGACATTACAGATAAAGCGTTGACAATGCTTGATGTTGATCACGAGGGGCTTGATTATATTGACCAAAAAATCTTGCG
CACGATGATTGAAGTTTATAATGGTGGACCTGTTGGTTTAGGGACTCTTTCTGTTAACATCGCAGAAGAACGTGATACGG
TTGAAGATATGTACGAACCTTATTTGATTCAAAAAGGATTTATCATGCGTACCAGAACTGGGCGCGTGGCAACTGCTAAG
GCATATGAACATTTAGGATATCCTTATATAGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.663	100	0.907
ruvB	Streptococcus pneumoniae D39	90.663	100	0.907
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.61	97.289	0.599
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47