Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   GO596_RS00405 Genome accession   NZ_CP046628
Coordinates   83000..83650 (+) Length   216 a.a.
NCBI ID   WP_157339018.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 78000..88650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00375 (GO596_00375) - 78130..78402 (-) 273 WP_027967912.1 DUF3165 family protein -
  GO596_RS00380 (GO596_00380) typA 78615..80459 (-) 1845 WP_004230714.1 translational GTPase TypA -
  GO596_RS00385 (GO596_00385) - 80645..81025 (-) 381 WP_021141851.1 rhodanese-like domain-containing protein -
  GO596_RS00390 (GO596_00390) - 81037..82005 (-) 969 WP_021141850.1 ROK family glucokinase -
  GO596_RS00395 (GO596_00395) - 81998..82207 (-) 210 WP_024344227.1 YqgQ family protein -
  GO596_RS00400 (GO596_00400) - 82334..82858 (-) 525 WP_021141848.1 Dps family protein -
  GO596_RS00405 (GO596_00405) cclA/cilC 83000..83650 (+) 651 WP_157339018.1 prepilin peptidase Machinery gene
  GO596_RS00410 (GO596_00410) - 83745..85085 (+) 1341 WP_157339019.1 Nramp family divalent metal transporter -
  GO596_RS00415 (GO596_00415) trpA 85122..85904 (-) 783 WP_157339020.1 tryptophan synthase subunit alpha -
  GO596_RS00420 (GO596_00420) trpB 85908..87110 (-) 1203 WP_157339021.1 tryptophan synthase subunit beta -
  GO596_RS00425 (GO596_00425) - 87107..87688 (-) 582 WP_021141841.1 phosphoribosylanthranilate isomerase -
  GO596_RS00430 (GO596_00430) trpC 87675..88442 (-) 768 WP_157339022.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24734.85 Da        Isoelectric Point: 7.0747

>NTDB_id=353935 GO596_RS00405 WP_157339018.1 83000..83650(+) (cclA/cilC) [Streptococcus equinus strain CNU 77-23]
MDILLFFFLGASFASFIGLVIERFPDESILFPASHCETCGKQLEVRDLIPVFSQIINRSRCRFCHTKLPIWYGIFEFICG
ILTAVCYQGMLPLSTLFIIFLSLTLSIYDLKYQSFPLLIWLLPSCCLLPVTPIKTLTIILLLFGIIAELVDVKLGSGDCF
YLATLSLFLDLQNILWIVEIGSFTGIIFCLLHKNKRIPFVPFLFFGYLFALFFKYT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=353935 GO596_RS00405 WP_157339018.1 83000..83650(+) (cclA/cilC) [Streptococcus equinus strain CNU 77-23]
ATGGACATTTTATTATTCTTTTTTCTCGGAGCATCCTTTGCTTCTTTCATCGGCTTAGTAATTGAACGTTTTCCAGACGA
ATCCATTCTTTTTCCAGCCAGTCATTGTGAGACTTGTGGCAAGCAACTTGAGGTTCGTGACTTGATTCCTGTGTTTTCAC
AAATTATCAATCGGTCGCGCTGCCGTTTTTGTCACACAAAACTCCCAATTTGGTATGGCATTTTTGAATTCATCTGCGGA
ATATTAACTGCCGTCTGCTATCAAGGAATGCTACCACTCTCGACACTCTTTATTATCTTTTTAAGTCTCACGCTCAGTAT
CTACGATTTAAAATACCAATCATTTCCTTTACTAATATGGTTGCTCCCGAGTTGCTGTTTACTCCCAGTTACACCAATCA
AAACTCTCACTATTATCCTTTTGTTATTTGGAATCATTGCAGAGCTAGTTGATGTGAAACTCGGTAGTGGAGATTGTTTT
TATCTAGCAACTTTGAGCCTTTTTTTGGACTTACAAAACATTTTATGGATTGTAGAAATCGGGTCATTTACAGGAATTAT
TTTTTGTCTTTTACACAAAAATAAACGAATTCCTTTTGTGCCTTTTCTCTTTTTTGGATACCTTTTTGCGTTATTTTTTA
AGTACACTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

40.952

97.222

0.398
  cclA/cilC Streptococcus pneumoniae TIGR4

40.476

97.222

0.394
  cclA/cilC Streptococcus mitis SK321

40

97.222

0.389
  cclA/cilC Streptococcus pneumoniae Rx1

40

97.222

0.389
  cclA/cilC Streptococcus pneumoniae D39

40

97.222

0.389
  cclA/cilC Streptococcus pneumoniae R6

40

97.222

0.389