Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GO602_RS22705 Genome accession   NZ_CP046602
Coordinates   4865812..4866309 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4860812..4871309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS22685 (GO602_22660) pchD 4861598..4863241 (+) 1644 WP_121127677.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  GO602_RS22690 (GO602_22665) pchC 4863238..4863993 (+) 756 WP_058140316.1 pyochelin biosynthesis editing thioesterase PchC -
  GO602_RS22695 (GO602_22670) pchB 4863993..4864298 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  GO602_RS22700 (GO602_22675) pchA 4864295..4865725 (+) 1431 WP_024917982.1 isochorismate synthase PchA -
  GO602_RS22705 (GO602_22680) ssb 4865812..4866309 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  GO602_RS22710 (GO602_22685) - 4866326..4867714 (-) 1389 WP_024917981.1 MFS transporter -
  GO602_RS22715 (GO602_22690) uvrA 4867929..4870766 (+) 2838 WP_024917980.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=353884 GO602_RS22705 WP_003114685.1 4865812..4866309(-) (ssb) [Pseudomonas aeruginosa strain CMC-115]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=353884 GO602_RS22705 WP_003114685.1 4865812..4866309(-) (ssb) [Pseudomonas aeruginosa strain CMC-115]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTATCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515