Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GO005_RS14330 Genome accession   NZ_CP046592
Coordinates   2755268..2755963 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain TR21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2750268..2760963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS14305 (GO005_14280) minD 2751204..2752010 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  GO005_RS14310 (GO005_14285) minC 2752012..2752692 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  GO005_RS14315 (GO005_14290) mreD 2752745..2753263 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  GO005_RS14320 (GO005_14295) mreC 2753260..2754132 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  GO005_RS14325 (GO005_14300) mreB 2754163..2755176 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GO005_RS14330 (GO005_14305) ysxA/radC 2755268..2755963 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  GO005_RS14335 (GO005_14310) maf 2756000..2756569 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GO005_RS14340 (GO005_14315) spoIIB 2756722..2757720 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  GO005_RS14345 (GO005_14320) comC 2757854..2758600 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  GO005_RS14350 (GO005_14325) folC 2758742..2760034 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=353783 GO005_RS14330 WP_003246034.1 2755268..2755963(-) (ysxA/radC) [Bacillus subtilis strain TR21]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=353783 GO005_RS14330 WP_003246034.1 2755268..2755963(-) (ysxA/radC) [Bacillus subtilis strain TR21]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCTAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424