Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4K03_RS15755 Genome accession   NZ_CP038262
Coordinates   3224728..3225054 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LEV1449/17Ec     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3223334..3232148 3224728..3225054 within 0


Gene organization within MGE regions


Location: 3223334..3232148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K03_RS15750 (E4K03_15750) fic 3223334..3224443 (-) 1110 WP_135013612.1 protein adenylyltransferase Fic -
  E4K03_RS15755 (E4K03_15755) ssb 3224728..3225054 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  E4K03_RS15760 (E4K03_15760) - 3225308..3227737 (-) 2430 WP_135013614.1 DUF927 domain-containing protein -
  E4K03_RS15765 (E4K03_15765) - 3227730..3228032 (-) 303 WP_135013616.1 hypothetical protein -
  E4K03_RS15770 (E4K03_15770) - 3228025..3228360 (-) 336 WP_108563740.1 hypothetical protein -
  E4K03_RS15775 (E4K03_15775) - 3228370..3228738 (-) 369 WP_135013618.1 hypothetical protein -
  E4K03_RS15780 (E4K03_15780) - 3228731..3229237 (-) 507 WP_004738463.1 BRO family protein -
  E4K03_RS15785 (E4K03_15785) - 3229234..3229452 (-) 219 WP_002124817.1 helix-turn-helix domain-containing protein -
  E4K03_RS15790 (E4K03_15790) - 3229456..3229671 (-) 216 WP_135013620.1 transcriptional regulator -
  E4K03_RS15795 (E4K03_15795) - 3229768..3230769 (-) 1002 WP_135013622.1 hypothetical protein -
  E4K03_RS15800 (E4K03_15800) - 3230919..3232148 (-) 1230 WP_135013625.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=352880 E4K03_RS15755 WP_002126519.1 3224728..3225054(-) (ssb) [Acinetobacter baumannii strain LEV1449/17Ec]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=352880 E4K03_RS15755 WP_002126519.1 3224728..3225054(-) (ssb) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment