Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   GOM46_RS00060 Genome accession   NZ_CP046525
Coordinates   19834..20070 (+) Length   78 a.a.
NCBI ID   WP_235083594.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 14834..25070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS00060 comW 19834..20070 (+) 237 WP_235083594.1 sigma(X)-activator ComW Regulator
  GOM46_RS00065 (GOM46_00065) - 20310..21596 (+) 1287 WP_235083595.1 adenylosuccinate synthase -
  GOM46_RS00070 (GOM46_00070) tadA 21796..22263 (+) 468 WP_006150521.1 tRNA adenosine(34) deaminase TadA -
  GOM46_RS00080 (GOM46_00080) - 22449..22892 (+) 444 WP_084938696.1 dUTP diphosphatase -
  GOM46_RS00085 (GOM46_00085) - 22902..23357 (+) 456 WP_235083596.1 isochorismatase family protein -
  GOM46_RS00090 (GOM46_00090) - 23376..23915 (+) 540 WP_235083597.1 histidine phosphatase family protein -
  GOM46_RS00095 (GOM46_00095) - 23932..24423 (+) 492 WP_235083598.1 hypothetical protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9800.35 Da        Isoelectric Point: 7.7626

>NTDB_id=352871 GOM46_RS00060 WP_235083594.1 19834..20070(+) (comW) [Streptococcus infantis strain SO]
MLQKYYDYCFLFLKQVEKEYSFLVQSSDDWESLHLRFLLYYLVRFRIKDEKDFLLCHFRAAYRIYLNHLLGQTFNYCS

Nucleotide


Download         Length: 237 bp        

>NTDB_id=352871 GOM46_RS00060 WP_235083594.1 19834..20070(+) (comW) [Streptococcus infantis strain SO]
ATGCTCCAAAAGTATTATGATTATTGTTTTCTTTTTCTAAAACAAGTTGAAAAAGAATATTCATTTTTAGTTCAATCTAG
TGATGATTGGGAGTCGCTTCATTTAAGATTTTTACTTTATTACTTAGTTCGTTTTAGGATAAAAGATGAGAAGGATTTTC
TTCTCTGTCATTTTAGGGCTGCTTATCGTATCTATCTTAATCATTTACTTGGACAAACATTCAATTATTGTTCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

44.872

100

0.449
  comW Streptococcus mitis NCTC 12261

45.714

89.744

0.41
  comW Streptococcus pneumoniae Rx1

45.714

89.744

0.41
  comW Streptococcus pneumoniae D39

45.714

89.744

0.41
  comW Streptococcus pneumoniae R6

45.714

89.744

0.41
  comW Streptococcus pneumoniae TIGR4

45.714

89.744

0.41

Multiple sequence alignment