Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GOM47_RS08855 Genome accession   NZ_CP046524
Coordinates   1771915..1772508 (-) Length   197 a.a.
NCBI ID   WP_235080567.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1766915..1777508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08830 (GOM47_08835) - 1767807..1768751 (+) 945 WP_000815625.1 magnesium transporter CorA family protein -
  GOM47_RS08835 (GOM47_08840) - 1768763..1769440 (+) 678 WP_235080564.1 DUF1129 domain-containing protein -
  GOM47_RS08840 (GOM47_08845) - 1769578..1770615 (+) 1038 WP_235080565.1 S66 peptidase family protein -
  GOM47_RS08845 (GOM47_08850) - 1770661..1771344 (-) 684 WP_235081287.1 CPBP family intramembrane glutamic endopeptidase -
  GOM47_RS08850 (GOM47_08855) - 1771345..1771905 (-) 561 WP_235080566.1 DNA-3-methyladenine glycosylase I -
  GOM47_RS08855 (GOM47_08860) ruvA 1771915..1772508 (-) 594 WP_235080567.1 Holliday junction branch migration protein RuvA Machinery gene
  GOM47_RS08860 (GOM47_08865) - 1772664..1773164 (+) 501 WP_235080568.1 helix-turn-helix domain-containing protein -
  GOM47_RS08865 (GOM47_08870) hexB 1773317..1775266 (-) 1950 WP_235080569.1 DNA mismatch repair endonuclease MutL Machinery gene
  GOM47_RS08870 (GOM47_08875) - 1775475..1775915 (+) 441 WP_235080570.1 LytTR family DNA-binding domain-containing protein -
  GOM47_RS08875 (GOM47_08880) - 1775912..1776370 (+) 459 WP_235080571.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.17 Da        Isoelectric Point: 5.7597

>NTDB_id=352854 GOM47_RS08855 WP_235080567.1 1771915..1772508(-) (ruvA) [Streptococcus oralis strain SOT]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKEAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=352854 GOM47_RS08855 WP_235080567.1 1771915..1772508(-) (ruvA) [Streptococcus oralis strain SOT]
ATGTACGAATATTTAAAAGGAATCATTACTAAAATCACTGCTAAATATATTGTCCTAGAGGCCAATGGTATCGGTTATAT
CTTGCATGTAGCTAATCCCTATGCTTACTCAGGTCAGGTTAATCAAGAGACCCAAATTTATGTGCATCAAGTTGTCCGTG
AGGACGCCCATCTGCTTTACGGTTTTCGATCAGAAGATGAGAAGAAGCTCTTTCTTAGTCTGATCTCGGTCTCAGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCAGCCGATGACAATGCTGGCTTGGTTCAGGCGATCGAGACTAAGAACATTAC
CTACTTGACTAAGTTCCCTAAAATTGGCAAGAAGACAGCTCAGCAGATGGTGCTAGACTTGGAAGGTAAGGTAGTTGTGG
CTAGTGATGACCTTCCTGCCAAGGAGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCATTGGGCTACAAGGCAACTGAACTCAAGAAGATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCAGCCCTTAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.954

100

0.97
  ruvA Streptococcus pneumoniae R6

96.447

100

0.964
  ruvA Streptococcus pneumoniae D39

96.447

100

0.964
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.262

100

0.431