Detailed information NTG0352852

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GOM47_RS08460
• Genome accession: NZ_CP046524
• Coordinates: 1701603..1702601 (-)
• Length: 332 a.a.
• NCBI ID: WP_321159574.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SOT
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1696603..1707601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM47_RS08440 (GOM47_08445)	eeP	1697986..1699242 (-)	1257	WP_235080526.1	RIP metalloprotease RseP	Regulator
GOM47_RS08445 (GOM47_08450)	-	1699258..1700061 (-)	804	WP_235080527.1	phosphatidate cytidylyltransferase	-
GOM47_RS08450 (GOM47_08455)	-	1700070..1700828 (-)	759	WP_235080528.1	isoprenyl transferase	-
GOM47_RS08455 (GOM47_08460)	-	1701038..1701622 (-)	585	WP_235080529.1	nucleotidyltransferase family protein	-
GOM47_RS08460 (GOM47_08465)	ruvB	1701603..1702601 (-)	999	WP_321159574.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GOM47_RS08465 (GOM47_08470)	-	1702786..1705197 (-)	2412	WP_235080530.1	flavocytochrome c	-
GOM47_RS08470 (GOM47_08475)	-	1705223..1705831 (-)	609	WP_000779603.1	NADPH-dependent FMN reductase	-
GOM47_RS08475 (GOM47_08480)	-	1706050..1707249 (+)	1200	WP_235080531.1	OFA family MFS transporter	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37245.66 Da
• Isoelectric Point: 4.4666

>NTDB_id=352852 GOM47_RS08460 WP_321159574.1 1701603..1702601(-) (ruvB) [Streptococcus oralis strain SOT]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPIGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=352852 GOM47_RS08460 WP_321159574.1 1701603..1702601(-) (ruvB) [Streptococcus oralis strain SOT]
ATGAGTAGAATTTTAGATAATGAAATCATGGGGGATGAGGAGTTGGTAGAACGTACCCTCCGTCCCCAGTATTTACGTGA
ATATATCGGTCAGGATAAGGTCAAGGATCAGCTTCAAATCTTTATCGAAGCTGCCAAAATGCGGGATGAAGCACTGGATC
ATGTACTCTTATTTGGGCCTCCAGGTTTGGGGAAAACGACCATGGCCTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTCATTGAAAAAGCGGGTGATCTGGTAGCGATTTTGAATGATTTGGAGCCTGGAGACGTTCT
CTTTATTGACGAGATTCATCGCTTGCCCATGTCGGTGGAAGAGGTGCTCTATAGTGCCATGGAGGACTTCTATATTGATA
TCATGATTGGGGCTGGAGAGGGCAGTCGCAGTGTCCATTTGGACTTGCCGCCTTTTACCTTGATTGGGGCTACGACACGT
GCGGGGATGCTCTCAAATCCTCTGCGGGCACGTTTTGGGATTACAGGTCATATGGAATACTATGCCCACGCTGACTTGAC
GGAAATTGTTGAACGAACAGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCTTCAGAGTTGGCCTTACGCAGTC
GTGGAACTCCTCGTATCGCCAATCGTCTCCTCAAGCGCGTGCGCGACTTTGCCCAGATTATGGGAGATGGCTTAATTGAT
GATGTTATTACAGATAAGGCTTTGACCATGCTAGATGTAGACCATGAAGGTTTGGACTATGTGGACCAAAAAATCCTTCG
GACCATGATTGAGATGTATGGTGGCGGTCCTATCGGTTTAGGAACTCTTTCTGTTAATATTGCCGAGGAGCGTGAGACGG
TCGAAGATATGTACGAACCTTACCTGATTCAGAAAGGTTTCATCATGCGAACTCGTTCTGGACGGGTAGCGACTGCTAAG
GCATATGAGCATTTAGGCTATGAATACAGTGAAAAATGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	98.193	100	0.982
ruvB	Streptococcus pneumoniae R6	97.892	100	0.979
ruvB	Streptococcus pneumoniae D39	97.892	100	0.979
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.736	98.193	0.596
ruvB	Helicobacter pylori 26695	51.084	97.289	0.497
ruvB	Synechocystis sp. PCC 6803	48.193	100	0.482