Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GOM47_RS07175 Genome accession   NZ_CP046524
Coordinates   1409399..1410187 (-) Length   262 a.a.
NCBI ID   WP_235080344.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404399..1415187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07150 (GOM47_07145) vex3 1405016..1406395 (-) 1380 WP_061426954.1 ABC transporter permease subunit Vex3 -
  GOM47_RS07155 (GOM47_07150) vex2 1406451..1407098 (-) 648 WP_235080341.1 ABC transporter ATP-binding subunit Vex2 -
  GOM47_RS07160 (GOM47_07155) - 1407111..1408388 (-) 1278 WP_235080342.1 ABC transporter permease -
  GOM47_RS07170 (GOM47_07165) - 1408824..1409399 (-) 576 WP_235080343.1 cysteine hydrolase family protein -
  GOM47_RS07175 (GOM47_07170) codY 1409399..1410187 (-) 789 WP_235080344.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GOM47_RS07180 (GOM47_07175) - 1410468..1412045 (-) 1578 WP_235080345.1 DEAD/DEAH box helicase -
  GOM47_RS07185 (GOM47_07180) - 1412361..1413677 (+) 1317 WP_235080346.1 FAD-containing oxidoreductase -
  GOM47_RS07190 (GOM47_07185) - 1413842..1415047 (+) 1206 WP_235080347.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29707.03 Da        Isoelectric Point: 5.0834

>NTDB_id=352828 GOM47_RS07175 WP_235080344.1 1409399..1410187(-) (codY) [Streptococcus oralis strain SOT]
MAHLLEKTRKITSILKRSEEQMQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKTFPDDYV
QGANMIYDTEANLPIEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=352828 GOM47_RS07175 WP_235080344.1 1409399..1410187(-) (codY) [Streptococcus oralis strain SOT]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCAATTTTAAAACGCTCAGAAGAGCAAATGCAGGATGAACTTCC
ATACAATGCCATTACACGTCAACTAGCAGACATTATTGATTGCAATGCCTGCATTGTCAATAGCAAGGGCCGTCTTTTGG
GCTACTTTATGCGCTATAAAACCAATACAGACCGTGTAGAGCAGTTTTTCCAAACCAAGACGTTCCCAGATGACTATGTA
CAAGGGGCAAACATGATCTACGATACGGAGGCCAATCTTCCTATTGAACATGATTTGACCATTTTCCCTGTAGAGAGTCG
TGCGGACTTTCCAGATGGTTTGACAACCATCGCTCCGATTCATGTATCAGGGATTCGTCTAGGTTCGTTGATTATTTGGC
GCAATGATAAGAAATTTGAAGATGAGGATTTGATTCTTGTTGAGATTGCGAGCACAGTGGTAGGGATTCAACTCTTGAAC
TTCCAACGTGAAGAAGATGAGAAAAATATCCGCCGCCGTACTGCTGTTACTATGGCGGTCAATACCCTTTCTTACTCAGA
ACTTCGTGCTGTTTCAGCTATTTTAGCTGAGCTGGATGGAAATGAAGGGCAGCTGACTGCGTCTGTTATAGCAGATCGTA
TTGGAATCACGCGCTCAGTGATTGTCAATGCTCTCCGTAAGCTAGAGTCGGCAGGAATTATTGAAAGCCGTTCACTAGGA
ATGAAGGGAACCTATCTAAAAGTATTGATTTCAGATATCTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469

Multiple sequence alignment