Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   E4K02_RS12305 Genome accession   NZ_CP038258
Coordinates   2504750..2505568 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499750..2510568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12290 (E4K02_12290) pilE 2499967..2500392 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  E4K02_RS12295 (E4K02_12295) pilY2 2500389..2500871 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  E4K02_RS12300 (E4K02_12300) pilY1 2500884..2504738 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  E4K02_RS12305 (E4K02_12305) pilX 2504750..2505568 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E4K02_RS12310 (E4K02_12310) pilW 2505565..2506566 (-) 1002 WP_000079193.1 PilW family protein Machinery gene
  E4K02_RS12315 (E4K02_12315) pilV 2506567..2507127 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  E4K02_RS12320 (E4K02_12320) fimU 2507121..2507594 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E4K02_RS12325 (E4K02_12325) ispH 2507764..2508714 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E4K02_RS12330 (E4K02_12330) gmk 2508837..2509466 (+) 630 WP_000015937.1 guanylate kinase -
  E4K02_RS12335 (E4K02_12335) rpoZ 2509539..2509817 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E4K02_RS12340 (E4K02_12340) - 2509856..2509986 (+) 131 Protein_2391 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=352820 E4K02_RS12305 WP_000149374.1 2504750..2505568(-) (pilX) [Acinetobacter baumannii strain 39741]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=352820 E4K02_RS12305 WP_000149374.1 2504750..2505568(-) (pilX) [Acinetobacter baumannii strain 39741]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment