Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   E4K02_RS12310 Genome accession   NZ_CP038258
Coordinates   2505565..2506566 (-) Length   333 a.a.
NCBI ID   WP_000079193.1    Uniprot ID   A0A3R9TLC9
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2500565..2511566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12300 (E4K02_12300) pilY1 2500884..2504738 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  E4K02_RS12305 (E4K02_12305) pilX 2504750..2505568 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E4K02_RS12310 (E4K02_12310) pilW 2505565..2506566 (-) 1002 WP_000079193.1 PilW family protein Machinery gene
  E4K02_RS12315 (E4K02_12315) pilV 2506567..2507127 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  E4K02_RS12320 (E4K02_12320) fimU 2507121..2507594 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E4K02_RS12325 (E4K02_12325) ispH 2507764..2508714 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E4K02_RS12330 (E4K02_12330) gmk 2508837..2509466 (+) 630 WP_000015937.1 guanylate kinase -
  E4K02_RS12335 (E4K02_12335) rpoZ 2509539..2509817 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E4K02_RS12340 (E4K02_12340) - 2509856..2509986 (+) 131 Protein_2391 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35771.45 Da        Isoelectric Point: 5.9994

>NTDB_id=352821 E4K02_RS12310 WP_000079193.1 2505565..2506566(-) (pilW) [Acinetobacter baumannii strain 39741]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSHGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=352821 E4K02_RS12310 WP_000079193.1 2505565..2506566(-) (pilW) [Acinetobacter baumannii strain 39741]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCATGGTGCAGGTGATACTGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGTTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9TLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.099

100

0.991

Multiple sequence alignment