Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM48_RS03635 Genome accession   NZ_CP046523
Coordinates   727017..728765 (+) Length   582 a.a.
NCBI ID   WP_235098440.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 722017..733765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS03615 (GOM48_03595) - 722038..723324 (+) 1287 WP_235098432.1 homoserine dehydrogenase -
  GOM48_RS03620 (GOM48_03600) thrB 723326..724195 (+) 870 WP_235098434.1 homoserine kinase -
  GOM48_RS03625 (GOM48_03605) msrB 724295..725233 (+) 939 WP_235098436.1 peptide-methionine (R)-S-oxide reductase MsrB -
  GOM48_RS03630 (GOM48_03610) - 725291..727015 (+) 1725 WP_235098438.1 ABC transporter ATP-binding protein -
  GOM48_RS03635 (GOM48_03615) rcrQ 727017..728765 (+) 1749 WP_235098440.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS03640 (GOM48_03620) - 728865..730124 (+) 1260 WP_235098441.1 TRZ/ATZ family protein -
  GOM48_RS03645 (GOM48_03625) rplJ 730361..730861 (+) 501 WP_049530475.1 50S ribosomal protein L10 -
  GOM48_RS03650 (GOM48_03630) rplL 730937..731302 (+) 366 WP_001196968.1 50S ribosomal protein L7/L12 -
  GOM48_RS03655 (GOM48_03635) - 731674..732240 (+) 567 WP_235098443.1 hypothetical protein -
  GOM48_RS03660 (GOM48_03640) - 732262..732582 (-) 321 Protein_693 NADP-specific glutamate dehydrogenase -
  GOM48_RS03665 (GOM48_03645) - 732563..733375 (+) 813 Protein_694 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64836.35 Da        Isoelectric Point: 8.0799

>NTDB_id=352695 GOM48_RS03635 WP_235098440.1 727017..728765(+) (rcrQ) [Streptococcus oralis strain SOD]
MRRQTANQTLTRLAKDLVNHPFLLFLAFLGTIAQVALSIYLPILIGQVIDQVLVAGSSPVFWQIFIQMILVVIGNTLVQW
VNPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKKSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLHEANTNYASYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTIGRLVTFLNYVQQYTKPFNDISSVLAELQSALACAERVYAVL
ESPEVVETGKEILTSDQVQGAISFKHVSFGYNPERILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPINSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLKQGTIHDNIAFGNPDASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEHGNH
QNLMARKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=352695 GOM48_RS03635 WP_235098440.1 727017..728765(+) (rcrQ) [Streptococcus oralis strain SOD]
ATGAGAAGACAAACTGCAAACCAGACGCTCACGCGTTTGGCTAAAGACCTTGTAAACCATCCTTTCCTCCTTTTCCTAGC
CTTTCTAGGAACCATTGCTCAGGTTGCCTTATCGATCTACCTACCTATTCTGATTGGGCAGGTCATTGACCAGGTCCTAG
TGGCTGGCTCTTCACCAGTTTTTTGGCAGATTTTCATTCAGATGATTTTGGTGGTCATAGGAAATACTCTGGTACAATGG
GTAAATCCTCTTCTCTATAATCGCCTAATCTTCTCTTATACCAGAGACTTGCGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCTTTTGTGGATCGGCAAGGCAGTGGGGAGATGGTCAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACTATGATTTTTAACCAATTTTTCATTGGCGTCTTGATGATTTTGGTTAGTATTTTAGCCATGCTCCAAATT
CATCTCCTCATGACCCTCTTGGTCTTGCTGTTGACGCCCCTATCCATGGTGATTTCACGCTTTATTGCCAAGAAATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACAAGGGGGATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATTA
TCCAGTCCTTCAATGCTCAAACAGAGTTTATCCAAAGACTGCATGAGGCGAATACCAACTACGCAAGTTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTTAATCCTTCGACTCGCTTTGTGAATGCACTCATCTATGCTCTTCTTGCTGGAGTAGG
AGCTTATCGTATCATGATGGGATCCACCTTGACCATCGGACGTTTAGTGACTTTTTTGAACTATGTCCAACAGTACACCA
AGCCCTTTAATGATATTTCTTCAGTTCTAGCCGAGTTGCAAAGTGCTCTCGCCTGCGCAGAGCGTGTCTATGCTGTCTTA
GAAAGTCCTGAGGTTGTTGAAACAGGTAAGGAAATCTTGACCAGTGACCAAGTACAGGGAGCCATTTCCTTTAAGCATGT
TTCTTTTGGCTACAATCCTGAAAGGATCTTGATTAAGGATTTGTCTATCGATATCCCAGCTGGTAGCAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGTAAGTCAACTCTCATCAATCTCCTCATGCGTTTTTATCCTATTAACTCGGGAGATATCTTG
TTAGATGGGCAATCCATTTATGATTATACCCGAGCATCATTGAGACAGCAGTTTGGAATGGTGCTCCAAGAAACCTGGCT
CAAGCAAGGAACTATTCATGATAATATTGCCTTTGGAAATCCTGATGCCAGTCGGGAACAAGTGATTGCTGCTGCAAAAG
CAGCTAACGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCAGGAGAATCTCTCTCT
GTTGGTCAAGCCCAGCTCTTGACCATCGCCCGAGTCTTTCTAGCTATTCCCAAGATTCTTATCTTAGATGAGGCGACTTC
CTCCATCGATACACGGACAGAGGTACTAGTTCAGGATGCCTTTGCCAAACTGATGAAGGGGCGCACAAGCTTTATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTGATTCTTGTCTTGGTAGATGGTGATATTGTGGAGCATGGCAATCAT
CAGAACCTCATGGCAAGAAAGGGTAAGTATTACCAAATGCAAAAAGCAGCAGCTTTTAGTTCCGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.258

97.766

0.364

Multiple sequence alignment