Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   GOM48_RS00105 Genome accession   NZ_CP046523
Coordinates   20918..21151 (+) Length   77 a.a.
NCBI ID   WP_000939517.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 15918..26151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS00100 (GOM48_00100) tnpA 20267..20653 (+) 387 Protein_14 IS200/IS605 family transposase -
  GOM48_RS00105 comW 20918..21151 (+) 234 WP_000939517.1 sigma(X)-activator ComW Regulator
  GOM48_RS00110 (GOM48_00105) - 21389..22675 (+) 1287 WP_223328858.1 adenylosuccinate synthase -
  GOM48_RS00115 (GOM48_00110) - 23158..23703 (-) 546 WP_235097610.1 hypothetical protein -
  GOM48_RS00120 (GOM48_00115) tadA 23969..24436 (+) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  GOM48_RS00130 (GOM48_00125) - 24622..25065 (+) 444 WP_000701979.1 dUTP diphosphatase -
  GOM48_RS00135 (GOM48_00130) - 25067..25582 (+) 516 WP_235097612.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 9520.09 Da        Isoelectric Point: 7.8398

>NTDB_id=352647 GOM48_RS00105 WP_000939517.1 20918..21151(+) (comW) [Streptococcus oralis strain SOD]
MLQKFYERAFVFLKLVEQEYASLCQSSAEWESLHLRFLLYYLIRFRIKSDKEFCLYHFQTAYRLYLDKFLLEGTTLN

Nucleotide


Download         Length: 234 bp        

>NTDB_id=352647 GOM48_RS00105 WP_000939517.1 20918..21151(+) (comW) [Streptococcus oralis strain SOD]
ATGCTTCAAAAATTTTATGAACGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCTTCTTTATGCCAGAGTTC
TGCTGAGTGGGAATCACTTCATCTTCGTTTTTTACTTTATTATTTGATAAGATTTAGAATTAAAAGCGATAAAGAGTTTT
GTTTATATCATTTTCAGACGGCCTATCGCTTGTATCTAGATAAATTCTTGCTAGAAGGTACTACTCTAAACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

43.056

93.506

0.403
  comW Streptococcus pneumoniae D39

43.056

93.506

0.403
  comW Streptococcus pneumoniae R6

43.056

93.506

0.403
  comW Streptococcus pneumoniae TIGR4

43.056

93.506

0.403
  comW Streptococcus mitis NCTC 12261

41.667

93.506

0.39
  comW Streptococcus mitis SK321

41.667

93.506

0.39