Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ES276_RS02585 Genome accession   NZ_CP038252
Coordinates   471347..472006 (-) Length   219 a.a.
NCBI ID   WP_000565004.1    Uniprot ID   A0AA95DDC2
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 466347..477006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS02555 (ES276_02715) - 466474..467040 (+) 567 WP_000601930.1 aminodeoxychorismate/anthranilate synthase component II -
  ES276_RS02560 (ES276_02720) trpD 467051..468055 (+) 1005 WP_000658684.1 anthranilate phosphoribosyltransferase -
  ES276_RS02565 (ES276_02725) trpC 468052..468819 (+) 768 WP_238093044.1 indole-3-glycerol phosphate synthase TrpC -
  ES276_RS02570 (ES276_02730) - 468806..469405 (+) 600 WP_000169890.1 phosphoribosylanthranilate isomerase -
  ES276_RS02575 (ES276_02735) trpB 469383..470606 (+) 1224 WP_000331289.1 tryptophan synthase subunit beta -
  ES276_RS02580 (ES276_02740) trpA 470599..471375 (+) 777 WP_001127029.1 tryptophan synthase subunit alpha -
  ES276_RS02585 (ES276_02745) cclA/cilC 471347..472006 (-) 660 WP_000565004.1 A24 family peptidase Machinery gene
  ES276_RS02590 (ES276_02750) - 472076..472522 (+) 447 WP_000155427.1 GNAT family N-acetyltransferase -
  ES276_RS02595 (ES276_02755) - 472700..472939 (+) 240 WP_001005784.1 transposase -
  ES276_RS02600 (ES276_02760) - 473049..473252 (-) 204 WP_000109957.1 CsbD family protein -
  ES276_RS02605 (ES276_02765) - 473283..473891 (-) 609 WP_000064115.1 Asp23/Gls24 family envelope stress response protein -
  ES276_RS02610 (ES276_02770) - 473930..474100 (-) 171 WP_000455066.1 DUF2273 domain-containing protein -
  ES276_RS02615 (ES276_02775) amaP 474112..474678 (-) 567 WP_000030213.1 alkaline shock response membrane anchor protein AmaP -
  ES276_RS02620 (ES276_02780) - 474762..474926 (-) 165 WP_001808603.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ES276_RS02625 (ES276_02785) mgaSpn 475369..476850 (+) 1482 WP_001205280.1 virulence factor transcriptional regulator MgaSpn -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24842.93 Da        Isoelectric Point: 7.6165

>NTDB_id=352617 ES276_RS02585 WP_000565004.1 471347..472006(-) (cclA/cilC) [Streptococcus pneumoniae strain TVO_1901936]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTPLRPLDLIPILSQVFNRFRCRYCKVRYPVWYALFELSLG
LLFLLYSWGWLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFQLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=352617 ES276_RS02585 WP_000565004.1 471347..472006(-) (cclA/cilC) [Streptococcus pneumoniae strain TVO_1901936]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTAGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCCCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAAGTTCGCTATCCTGTCTGGTATGCCCTCTTTGAATTAAGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGGATGGCTCTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCAGCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTC
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

100

100

1

  cclA/cilC Streptococcus pneumoniae Rx1

94.977

100

0.95

  cclA/cilC Streptococcus pneumoniae D39

94.977

100

0.95

  cclA/cilC Streptococcus pneumoniae R6

94.977

100

0.95

  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918

  cclA/cilC Streptococcus mitis NCTC 12261

87.215

100

0.872


Multiple sequence alignment