Detailed information NTG0352546

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GE024_RS00375
• Genome accession: NZ_CP046521
• Coordinates: 57312..58310 (+)
• Length: 332 a.a.
• NCBI ID: WP_093999214.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_100
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 52312..63310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE024_RS00355 (GE024_00355)	purE	52669..53160 (+)	492	WP_093999210.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
GE024_RS00360 (GE024_00360)	purK	53147..54217 (+)	1071	WP_093999211.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
GE024_RS00365 (GE024_00365)	purB	54744..56036 (+)	1293	WP_093999212.1	adenylosuccinate lyase	-
GE024_RS00370 (GE024_00370)	comR	56174..57085 (+)	912	WP_093999213.1	transcriptional regulator Rgg4/ComR	Regulator
GE024_RS11345	comS	57174..57269 (+)	96	WP_205407142.1	quorum-sensing system DWW-type pheromone	Regulator
GE024_RS00375 (GE024_00375)	ruvB	57312..58310 (+)	999	WP_093999214.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GE024_RS00380 (GE024_00380)	-	58451..58894 (+)	444	WP_093999215.1	low molecular weight protein-tyrosine-phosphatase	-
GE024_RS00385 (GE024_00385)	-	58911..59312 (+)	402	WP_093999216.1	MORN repeat-containing protein	-
GE024_RS00390 (GE024_00390)	-	59309..61084 (+)	1776	WP_093999217.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37412.92 Da
• Isoelectric Point: 4.6446

>NTDB_id=352546 GE024_RS00375 WP_093999214.1 57312..58310(+) (ruvB) [Streptococcus canis strain HL_100]
MARILDNDIMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIKAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFEMEIIHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
TQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYHHLGYPYQSH

Nucleotide

• Length: 999 bp

>NTDB_id=352546 GE024_RS00375 WP_093999214.1 57312..58310(+) (ruvB) [Streptococcus canis strain HL_100]
ATGGCTAGAATTTTAGATAATGATATAATGGGGGACGAGGAGCTTGTTGAGCGAACTCTTCGTCCACAGTACTTGCGTGA
GTACATCGGGCAAGATAAAGTTAAAGAACAGTTAACCATTTTTATTAAAGCAGCTAAGCTGCGTGATGAGTCTTTGGATC
ATGTCTTGCTGTTTGGTCCTCCAGGGTTAGGGAAAACGACTATGGCATTTGTGATTGCTAATGAATTAGGGGTTAATTTG
AAGCAAACCTCAGGTCCAGCGATTGAAAAGGCTGGAGACTTGGTGGCCATTTTGAATGATTTGGAACCGGGGGATGTCTT
ATTTATTGATGAAATTCATCGCATGCCGATGGCTGTTGAGGAAGTGCTGTATAGCGCTATGGAAGATTTTTATATTGACA
TTATGATTGGTGCTGGAGATACCAGTCGAAGTGTTCATTTGGATTTACCGCCCTTTACGTTGATTGGTGCGACAACGCGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGTTTTGGTATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTGGAACGGACAGCGGATATTTTTGAAATGGAAATTATCCACGAGGCGGCCCAAGAGCTAGCTTGTCGCAGTC
GAGGAACCCCACGTATTGCCAATCGATTATTAAAACGAGTGCGTGACTATGCTCAAATTGTTGGAGATGGAGTGATTACA
ACGCAAATCACGGATAAGGCTTTAACCATGTTGGATGTTGACCGAGAAGGGCTTGATTATGTGGACCAAAAGATTTTACG
AACCATGATTGAAATGTATCAGGGTGGTCCGGTTGGTTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACGG
TTGAAGACATGTATGAACCCTATTTAATTCAAAAAGGGTTTCTAATGCGTACGCGCACTGGTCGTGTAGTAACTGAAAAA
GCCTATCATCATCTTGGCTACCCTTACCAAAGCCATTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.394	99.398	0.889
ruvB	Streptococcus pneumoniae R6	89.394	99.398	0.889
ruvB	Streptococcus pneumoniae D39	89.394	99.398	0.889
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.3	97.289	0.596
ruvB	Helicobacter pylori 26695	50	98.193	0.491
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47