Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EOJ31_RS11695 Genome accession   NZ_CP038242
Coordinates   2396181..2396696 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus warneri strain GD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2385026..2398211 2396181..2396696 within 0


Gene organization within MGE regions


Location: 2385026..2398211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOJ31_RS11600 - 2385026..2385541 (-) 516 WP_189723412.1 terminase small subunit -
  EOJ31_RS11605 - 2385546..2385887 (-) 342 WP_058709465.1 helix-turn-helix domain-containing protein -
  EOJ31_RS11610 - 2385890..2386348 (-) 459 WP_189723414.1 pathogenicity island protein -
  EOJ31_RS11615 - 2386409..2387119 (-) 711 WP_189723416.1 hypothetical protein -
  EOJ31_RS11620 - 2387149..2387490 (-) 342 WP_047210632.1 hypothetical protein -
  EOJ31_RS11625 - 2387938..2388579 (-) 642 WP_189723418.1 pathogenicity island protein -
  EOJ31_RS11630 - 2388580..2388945 (-) 366 WP_058709461.1 hypothetical protein -
  EOJ31_RS11635 - 2388957..2389232 (-) 276 WP_078103909.1 pathogenicity island protein -
  EOJ31_RS11640 - 2389219..2390022 (-) 804 WP_047210628.1 bifunctional DNA primase/polymerase -
  EOJ31_RS11645 - 2390193..2391806 (-) 1614 WP_053018617.1 hypothetical protein -
  EOJ31_RS11650 tscT 2391881..2392186 (-) 306 WP_047210626.1 type II toxin-antitoxin system toxin TscT -
  EOJ31_RS11655 - 2392186..2392548 (-) 363 WP_047210625.1 hypothetical protein -
  EOJ31_RS11660 tscA 2392550..2392762 (-) 213 WP_019235763.1 type II toxin-antitoxin system antitoxin TscA -
  EOJ31_RS11665 - 2392764..2392901 (-) 138 WP_162889408.1 hypothetical protein -
  EOJ31_RS11670 - 2392917..2393189 (-) 273 WP_047210624.1 helix-turn-helix domain-containing protein -
  EOJ31_RS11675 - 2393189..2393404 (-) 216 WP_047210623.1 helix-turn-helix transcriptional regulator -
  EOJ31_RS11680 - 2393596..2394519 (+) 924 WP_047210622.1 helix-turn-helix domain-containing protein -
  EOJ31_RS11685 - 2394528..2395748 (+) 1221 WP_189723420.1 site-specific integrase -
  EOJ31_RS11690 rpsR 2395894..2396136 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  EOJ31_RS11695 ssbA 2396181..2396696 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  EOJ31_RS11700 rpsF 2396718..2397014 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  EOJ31_RS11705 - 2397390..2398211 (+) 822 WP_002466546.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=352517 EOJ31_RS11695 WP_002466536.1 2396181..2396696(-) (ssbA) [Staphylococcus warneri strain GD01]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=352517 EOJ31_RS11695 WP_002466536.1 2396181..2396696(-) (ssbA) [Staphylococcus warneri strain GD01]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment