Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ETW23_RS03965 Genome accession   NZ_CP038234
Coordinates   810518..810961 (+) Length   147 a.a.
NCBI ID   WP_134829205.1    Uniprot ID   -
Organism   Leisingera sp. NJS201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 777850..817401 810518..810961 within 0


Gene organization within MGE regions


Location: 777850..817401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETW23_RS25345 - 777850..778452 (-) 603 WP_205879939.1 hypothetical protein -
  ETW23_RS03785 (ETW23_03785) - 778465..778770 (-) 306 WP_134829170.1 hypothetical protein -
  ETW23_RS03790 (ETW23_03790) - 778791..779702 (-) 912 WP_254695137.1 site-specific integrase -
  ETW23_RS03795 (ETW23_03795) - 780420..780731 (-) 312 WP_134829172.1 hypothetical protein -
  ETW23_RS03800 (ETW23_03800) - 780923..781222 (+) 300 WP_134829173.1 hypothetical protein -
  ETW23_RS03805 (ETW23_03805) - 781666..782103 (+) 438 WP_134829174.1 helix-turn-helix domain-containing protein -
  ETW23_RS03810 (ETW23_03810) - 782100..783260 (+) 1161 WP_134829175.1 primase-helicase zinc-binding domain-containing protein -
  ETW23_RS03815 (ETW23_03815) - 783244..784866 (+) 1623 WP_134829176.1 phage/plasmid primase, P4 family -
  ETW23_RS03820 (ETW23_03820) - 784863..785234 (+) 372 WP_134829177.1 hypothetical protein -
  ETW23_RS03825 (ETW23_03825) - 785826..786062 (+) 237 WP_134829178.1 hypothetical protein -
  ETW23_RS03830 (ETW23_03830) - 786590..787312 (+) 723 WP_134829179.1 hypothetical protein -
  ETW23_RS03835 (ETW23_03835) - 787436..787837 (+) 402 WP_134829180.1 HNH endonuclease signature motif containing protein -
  ETW23_RS03840 (ETW23_03840) - 787899..788378 (+) 480 WP_134829181.1 hypothetical protein -
  ETW23_RS03845 (ETW23_03845) - 788378..790096 (+) 1719 WP_134829182.1 terminase large subunit -
  ETW23_RS03850 (ETW23_03850) - 790110..791426 (+) 1317 WP_167738073.1 phage portal protein -
  ETW23_RS03855 (ETW23_03855) - 791419..792012 (+) 594 WP_134829184.1 HK97 family phage prohead protease -
  ETW23_RS03860 (ETW23_03860) - 792071..793351 (+) 1281 WP_134829185.1 phage major capsid protein -
  ETW23_RS03865 (ETW23_03865) - 793457..793855 (+) 399 WP_134829186.1 hypothetical protein -
  ETW23_RS03870 (ETW23_03870) - 793862..794443 (+) 582 WP_134829187.1 hypothetical protein -
  ETW23_RS03875 (ETW23_03875) - 794440..794796 (+) 357 WP_134829188.1 phage head closure protein -
  ETW23_RS03880 (ETW23_03880) - 794793..795191 (+) 399 WP_134829189.1 hypothetical protein -
  ETW23_RS03885 (ETW23_03885) - 795184..795600 (+) 417 WP_134829190.1 DUF3168 domain-containing protein -
  ETW23_RS03890 (ETW23_03890) - 795681..796094 (+) 414 WP_134829191.1 phage tail tube protein -
  ETW23_RS03895 (ETW23_03895) - 796095..796532 (+) 438 WP_134829192.1 GTA-gp10 family protein -
  ETW23_RS03900 (ETW23_03900) - 796707..798773 (+) 2067 WP_134829193.1 hypothetical protein -
  ETW23_RS03905 (ETW23_03905) - 798751..799449 (+) 699 WP_134829194.1 hypothetical protein -
  ETW23_RS03910 (ETW23_03910) - 799451..800110 (+) 660 WP_254695138.1 hypothetical protein -
  ETW23_RS03915 (ETW23_03915) - 800113..800538 (+) 426 WP_134829195.1 hypothetical protein -
  ETW23_RS03920 (ETW23_03920) - 800547..805655 (+) 5109 WP_167738074.1 phage tail protein -
  ETW23_RS03925 (ETW23_03925) - 805652..806044 (+) 393 WP_134829197.1 hypothetical protein -
  ETW23_RS03930 (ETW23_03930) - 806044..806472 (+) 429 WP_134829198.1 hypothetical protein -
  ETW23_RS03935 (ETW23_03935) - 806472..807401 (+) 930 WP_134829199.1 GNAT family N-acetyltransferase -
  ETW23_RS03940 (ETW23_03940) - 807398..807748 (+) 351 WP_134829200.1 hypothetical protein -
  ETW23_RS03945 (ETW23_03945) - 807859..808608 (+) 750 WP_134829201.1 M15 family metallopeptidase -
  ETW23_RS03950 (ETW23_03950) - 808617..809066 (+) 450 WP_134829202.1 bacteriophage spanin2 family protein -
  ETW23_RS03955 (ETW23_03955) - 809060..810298 (+) 1239 WP_134829203.1 sigma factor-like helix-turn-helix DNA-binding protein -
  ETW23_RS03960 (ETW23_03960) - 810298..810531 (+) 234 WP_134829204.1 hypothetical protein -
  ETW23_RS03965 (ETW23_03965) ssb 810518..810961 (+) 444 WP_134829205.1 single-stranded DNA-binding protein Machinery gene
  ETW23_RS03970 (ETW23_03970) - 811296..812309 (+) 1014 WP_134829206.1 hypothetical protein -
  ETW23_RS03980 (ETW23_03980) - 812703..813941 (+) 1239 WP_123619028.1 site-specific integrase -
  ETW23_RS03985 (ETW23_03985) - 814136..815299 (+) 1164 WP_123619029.1 AAA family ATPase -
  ETW23_RS03990 (ETW23_03990) - 815405..815653 (+) 249 WP_096870596.1 hypothetical protein -
  ETW23_RS03995 (ETW23_03995) - 815670..815984 (-) 315 WP_096870597.1 hypothetical protein -
  ETW23_RS04000 (ETW23_04000) - 815981..816415 (-) 435 WP_134829207.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16189.93 Da        Isoelectric Point: 6.8833

>NTDB_id=352468 ETW23_RS03965 WP_134829205.1 810518..810961(+) (ssb) [Leisingera sp. NJS201]
MGRINKVILVGHLGRDPEVRTFQNGDKVANLSIATTERWKDRNSGEQREETEWHRVAIFGSLARVAEQYLRKGSHVYLEG
KLKTRKWQDQGGQDRYSTEVVLKPYDGTMDMLDKQDGGPGAGSTQGGGYGHQGGQGGAGALDDEIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=352468 ETW23_RS03965 WP_134829205.1 810518..810961(+) (ssb) [Leisingera sp. NJS201]
ATGGGACGGATTAATAAGGTTATTCTTGTGGGCCACCTCGGGCGCGATCCCGAGGTGCGCACCTTCCAGAATGGCGATAA
GGTAGCAAACCTCAGCATTGCCACCACTGAGCGCTGGAAGGACCGCAATAGCGGGGAGCAGCGGGAAGAGACCGAATGGC
ACCGGGTGGCGATCTTTGGCAGCCTGGCGCGGGTTGCGGAGCAGTATCTGCGCAAAGGCTCGCATGTGTACCTGGAGGGC
AAGTTGAAAACCCGCAAATGGCAGGACCAAGGCGGCCAGGACCGCTATTCCACTGAGGTGGTGCTGAAACCCTACGACGG
CACCATGGACATGCTGGACAAGCAGGACGGCGGACCCGGTGCGGGCAGCACTCAGGGCGGCGGATATGGCCATCAGGGCG
GCCAAGGCGGCGCTGGCGCCCTTGATGATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.542

89.116

0.531
  ssb Glaesserella parasuis strain SC1401

55.556

91.837

0.51
  ssb Neisseria gonorrhoeae MS11

46.094

87.075

0.401
  ssb Neisseria meningitidis MC58

46.094

87.075

0.401

Multiple sequence alignment