Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GFX43_RS07895 Genome accession   NZ_CP046448
Coordinates   1549147..1549842 (+) Length   231 a.a.
NCBI ID   WP_015384272.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544147..1554842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS07875 (GFX43_007875) folC 1545078..1546370 (+) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GFX43_RS07880 (GFX43_007880) comC 1546510..1547256 (+) 747 WP_015384274.1 A24 family peptidase Machinery gene
  GFX43_RS07885 (GFX43_007885) spoIIB 1547390..1548388 (+) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  GFX43_RS07890 (GFX43_007890) maf 1548541..1549110 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GFX43_RS07895 (GFX43_007895) ysxA/radC 1549147..1549842 (+) 696 WP_015384272.1 DNA repair protein RadC Machinery gene
  GFX43_RS07900 (GFX43_007900) mreB 1549934..1550947 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GFX43_RS07905 (GFX43_007905) mreC 1550978..1551850 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  GFX43_RS07910 (GFX43_007910) mreD 1551847..1552365 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  GFX43_RS07915 (GFX43_007915) minC 1552418..1553098 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  GFX43_RS07920 (GFX43_007920) minD 1553100..1553906 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26142.47 Da        Isoelectric Point: 7.9285

>NTDB_id=352355 GFX43_RS07895 WP_015384272.1 1549147..1549842(+) (ysxA/radC) [Bacillus subtilis strain ZD01]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=352355 GFX43_RS07895 WP_015384272.1 1549147..1549842(+) (ysxA/radC) [Bacillus subtilis strain ZD01]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTTCTGAAAGTCGG
AGCCGAGAACTTAGCGAACCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGATGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCATATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.571

90.909

0.442
  radC Streptococcus pneumoniae R6

48.095

90.909

0.437
  radC Streptococcus pneumoniae D39

48.095

90.909

0.437
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429