Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E3U24_RS09640 | Genome accession | NZ_CP038203 |
| Coordinates | 1935679..1936185 (+) | Length | 168 a.a. |
| NCBI ID | WP_024845110.1 | Uniprot ID | A0A1I5JTS5 |
| Organism | Paracoccus pantotrophus strain DSM 11072 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1930679..1941185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3U24_RS09620 (E3U24_09525) | - | 1932424..1932990 (-) | 567 | WP_024845114.1 | hypothetical protein | - |
| E3U24_RS09625 (E3U24_09530) | hemB | 1933142..1934140 (+) | 999 | WP_024845113.1 | porphobilinogen synthase | - |
| E3U24_RS09630 (E3U24_09535) | - | 1934214..1934783 (+) | 570 | WP_024845112.1 | YSC84-related protein | - |
| E3U24_RS09635 (E3U24_09540) | - | 1934825..1935472 (-) | 648 | WP_024845111.1 | lytic transglycosylase domain-containing protein | - |
| E3U24_RS09640 (E3U24_09545) | ssb | 1935679..1936185 (+) | 507 | WP_024845110.1 | single-stranded DNA-binding protein | Machinery gene |
| E3U24_RS09645 (E3U24_09550) | - | 1936245..1937015 (-) | 771 | WP_024845109.1 | FCD domain-containing protein | - |
| E3U24_RS09650 (E3U24_09555) | - | 1937024..1938508 (-) | 1485 | WP_024845108.1 | M81 family metallopeptidase | - |
| E3U24_RS09655 (E3U24_09560) | - | 1938505..1939764 (-) | 1260 | WP_024845107.1 | Zn-dependent hydrolase | - |
| E3U24_RS09660 (E3U24_09565) | - | 1939776..1940480 (-) | 705 | WP_114669261.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 17880.43 Da Isoelectric Point: 6.4863
>NTDB_id=352287 E3U24_RS09640 WP_024845110.1 1935679..1936185(+) (ssb) [Paracoccus pantotrophus strain DSM 11072]
MAGSVNKVILVGNLGQDPEIRSFPSGGKVANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDSRGGGGGGGRDDGYGGGGYGGGGYGGGSSSGGSSSGGGGQSQNRP
DFDDDIPF
MAGSVNKVILVGNLGQDPEIRSFPSGGKVANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDSRGGGGGGGRDDGYGGGGYGGGGYGGGSSSGGSSSGGGGQSQNRP
DFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=352287 E3U24_RS09640 WP_024845110.1 1935679..1936185(+) (ssb) [Paracoccus pantotrophus strain DSM 11072]
ATGGCTGGCAGCGTGAACAAGGTGATCCTGGTCGGCAACCTGGGCCAAGACCCGGAGATCCGCAGCTTTCCCAGCGGCGG
CAAGGTCGCCAACCTGCGCATCGCCACGTCCGAGACCTGGAAGGACCGCAATACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACACGGTCGCCATCTATTCCGAGCCCCTGGTCCGCGTGGCCGAGCAATATCTGAAAAAGGGCTCCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGAGCGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGCCCCTT
CCGCAGCGAGCTGCACATGCTCGACAGCCGCGGCGGCGGCGGTGGCGGCGGCCGCGATGACGGTTATGGCGGCGGCGGTT
ACGGTGGCGGCGGCTATGGCGGCGGCAGCTCGTCGGGCGGCAGTTCCTCGGGCGGCGGCGGGCAATCGCAGAACCGGCCC
GATTTCGACGACGACATCCCGTTCTGA
ATGGCTGGCAGCGTGAACAAGGTGATCCTGGTCGGCAACCTGGGCCAAGACCCGGAGATCCGCAGCTTTCCCAGCGGCGG
CAAGGTCGCCAACCTGCGCATCGCCACGTCCGAGACCTGGAAGGACCGCAATACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACACGGTCGCCATCTATTCCGAGCCCCTGGTCCGCGTGGCCGAGCAATATCTGAAAAAGGGCTCCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGAGCGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGCCCCTT
CCGCAGCGAGCTGCACATGCTCGACAGCCGCGGCGGCGGCGGTGGCGGCGGCCGCGATGACGGTTATGGCGGCGGCGGTT
ACGGTGGCGGCGGCTATGGCGGCGGCAGCTCGTCGGGCGGCAGTTCCTCGGGCGGCGGCGGGCAATCGCAGAACCGGCCC
GATTTCGACGACGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.757 |
100 |
0.554 |
| ssb | Glaesserella parasuis strain SC1401 |
47.849 |
100 |
0.53 |
| ssb | Neisseria meningitidis MC58 |
39.894 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
40.223 |
100 |
0.429 |