Detailed information NTG0351648

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GNT44_RS07890
• Genome accession: NZ_CP046402
• Coordinates: 1633326..1634330 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5331
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1628326..1639330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNT44_RS07875 (GNT44_07870)	-	1628809..1629816 (+)	1008	WP_003092265.1	TolB family protein	-
GNT44_RS07880 (GNT44_07875)	mutS	1629942..1632509 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
GNT44_RS07885 (GNT44_07880)	fdxA	1632576..1632899 (+)	324	WP_003092272.1	ferredoxin FdxA	-
GNT44_RS07890 (GNT44_07885)	rpoS	1633326..1634330 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GNT44_RS07895 (GNT44_07890)	-	1634435..1635328 (-)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
GNT44_RS07900 (GNT44_07895)	-	1635374..1636009 (-)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GNT44_RS07905 (GNT44_07900)	surE	1636042..1636791 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GNT44_RS07910 (GNT44_07905)	truD	1636779..1637846 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
GNT44_RS07915 (GNT44_07910)	ispF	1637843..1638316 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GNT44_RS07920 (GNT44_07915)	fghA	1638387..1639238 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=351648 GNT44_RS07890 WP_003113871.1 1633326..1634330(-) (rpoS) [Pseudomonas aeruginosa strain SE5331]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=351648 GNT44_RS07890 WP_003113871.1 1633326..1634330(-) (rpoS) [Pseudomonas aeruginosa strain SE5331]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653