Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3U44_RS03535 Genome accession   NZ_CP038033
Coordinates   726432..726905 (+) Length   157 a.a.
NCBI ID   WP_134356696.1    Uniprot ID   -
Organism   Nitrosococcus wardiae strain D1FHS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 721432..731905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U44_RS03525 (E3U44_03525) uvrA 722044..724911 (-) 2868 WP_134356694.1 excinuclease ABC subunit UvrA -
  E3U44_RS03530 (E3U44_03530) - 724974..726392 (+) 1419 WP_134356695.1 MFS transporter -
  E3U44_RS03535 (E3U44_03535) ssb 726432..726905 (+) 474 WP_134356696.1 single-stranded DNA-binding protein Machinery gene
  E3U44_RS03540 (E3U44_03540) - 726788..728194 (-) 1407 WP_134356697.1 DUF389 domain-containing protein -
  E3U44_RS03545 (E3U44_03545) - 728633..729541 (+) 909 WP_134356698.1 complex I NDUFA9 subunit family protein -
  E3U44_RS03550 (E3U44_03550) - 729664..730647 (-) 984 WP_134356699.1 metallophosphoesterase -
  E3U44_RS03555 (E3U44_03555) - 730913..731392 (+) 480 WP_166804989.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17221.02 Da        Isoelectric Point: 4.8158

>NTDB_id=351648 E3U44_RS03535 WP_134356696.1 726432..726905(+) (ssb) [Nitrosococcus wardiae strain D1FHS]
MAARGVNKVILIGNLGRDPEVRYTASGGAIANITLATSETWKDKTTGEQQERTEWHRVVFFGRLGEIAGEYLKKGSKIYV
EGRLQTRKWQGQDGQDRYTTEIVANEMQMLDRATGGSAPYNNDMSQGSAPGPSSPPSRTSPPPPPSSDDDFEDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=351648 E3U44_RS03535 WP_134356696.1 726432..726905(+) (ssb) [Nitrosococcus wardiae strain D1FHS]
GTGGCAGCAAGAGGCGTTAACAAAGTCATCCTGATAGGTAACCTGGGACGGGACCCGGAAGTCCGCTATACCGCCAGTGG
CGGGGCCATCGCCAATATTACCTTGGCCACCTCAGAGACCTGGAAAGATAAAACCACCGGCGAGCAACAGGAACGCACCG
AATGGCACCGGGTGGTGTTCTTCGGCCGTCTGGGGGAAATTGCCGGTGAATACCTCAAAAAAGGTTCCAAGATCTACGTG
GAAGGCCGCCTCCAAACCCGCAAATGGCAAGGCCAGGACGGTCAGGACCGCTATACCACCGAGATCGTCGCCAACGAAAT
GCAGATGCTGGACCGGGCAACCGGCGGCAGCGCCCCCTATAACAATGACATGAGCCAAGGCTCGGCCCCAGGTCCTTCTA
GCCCCCCGTCCCGGACTTCACCTCCCCCACCCCCCTCAAGCGATGATGATTTTGAGGATGATATACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.65
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.573
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.51
  ssb Neisseria meningitidis MC58

46.243

100

0.51

Multiple sequence alignment