Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNX12_RS21820 Genome accession   NZ_CP046396
Coordinates   4569950..4570486 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ampC_0069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4564950..4575486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS21800 (GNX12_21810) soxR 4566678..4567142 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  GNX12_RS21805 (GNX12_21815) soxS 4567228..4567551 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  GNX12_RS21810 (GNX12_21820) pdeC 4567554..4569140 (-) 1587 WP_173860294.1 c-di-GMP phosphodiesterase PdeC -
  GNX12_RS21815 (GNX12_21825) yjcB 4569570..4569851 (+) 282 WP_001295689.1 YjcB family protein -
  GNX12_RS21820 (GNX12_21830) ssb 4569950..4570486 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GNX12_RS21825 (GNX12_21835) uvrA 4570741..4573563 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  GNX12_RS21830 (GNX12_21840) yjbR 4573598..4573954 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  GNX12_RS21835 (GNX12_21845) yjbQ 4573958..4574374 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GNX12_RS21840 (GNX12_21850) aphA 4574485..4575198 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=351609 GNX12_RS21820 WP_000168305.1 4569950..4570486(-) (ssb) [Escherichia coli strain ampC_0069]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=351609 GNX12_RS21820 WP_000168305.1 4569950..4570486(-) (ssb) [Escherichia coli strain ampC_0069]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489