Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E1742_RS17240 Genome accession   NZ_CP038026
Coordinates   3940635..3941153 (+) Length   172 a.a.
NCBI ID   WP_134386202.1    Uniprot ID   A0A4P7BHE5
Organism   Pseudoduganella plicata strain DSM 17505     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3935635..3946153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1742_RS17225 (E1742_17225) - 3935865..3936479 (+) 615 WP_134386199.1 TetR/AcrR family transcriptional regulator -
  E1742_RS17230 (E1742_17230) - 3936672..3937301 (+) 630 WP_134386200.1 2-hydroxychromene-2-carboxylate isomerase -
  E1742_RS17235 (E1742_17235) uvrA 3937311..3940178 (-) 2868 WP_134386201.1 excinuclease ABC subunit UvrA -
  E1742_RS17240 (E1742_17240) ssb 3940635..3941153 (+) 519 WP_134386202.1 single-stranded DNA-binding protein Machinery gene
  E1742_RS17245 (E1742_17245) - 3941348..3942103 (-) 756 WP_134386203.1 SDR family NAD(P)-dependent oxidoreductase -
  E1742_RS17250 (E1742_17250) - 3942501..3943151 (-) 651 WP_229466052.1 nuclear transport factor 2 family protein -
  E1742_RS17255 (E1742_17255) - 3943283..3944053 (-) 771 WP_134386204.1 SDR family oxidoreductase -
  E1742_RS17260 (E1742_17260) - 3944074..3944520 (-) 447 WP_134386205.1 ester cyclase -
  E1742_RS17265 (E1742_17265) - 3944637..3945656 (-) 1020 WP_229466054.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18483.85 Da        Isoelectric Point: 5.9518

>NTDB_id=351534 E1742_RS17240 WP_134386202.1 3940635..3941153(+) (ssb) [Pseudoduganella plicata strain DSM 17505]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSFRSKDKNTGEQKEVTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAQEMQMLGGRQGMGGEGGMGMGGGDEMGMGGGGYDAPPSRPAPRPQQSAPAPRPAPKPA
PNFSDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=351534 E1742_RS17240 WP_134386202.1 3940635..3941153(+) (ssb) [Pseudoduganella plicata strain DSM 17505]
ATGGCATCTGTCAATAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCGGAGATCCGCTACATGCCGAGCGGCGATGC
CATCGCCAATATTGCCGTTGCCACGTCGTTCCGCAGCAAGGACAAGAACACGGGCGAGCAGAAGGAAGTGACGGAATGGC
ACCGCATCTCGTTCTTCGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTCAAGAAGGGCTCGTCCGTCTACGTCGAAGGC
CGCCTGCAGACGCGCAAGTACACCGACAAGGACGGCGTTGAGAAGTACGCAACCGACATTATCGCGCAGGAAATGCAGAT
GCTGGGCGGCCGCCAGGGCATGGGCGGCGAAGGCGGCATGGGCATGGGTGGCGGCGACGAGATGGGCATGGGCGGTGGCG
GCTACGACGCACCTCCTAGCCGTCCGGCGCCACGTCCGCAGCAGTCGGCCCCGGCACCACGCCCGGCACCGAAGCCGGCG
CCGAACTTCTCGGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7BHE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.541
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.529
  ssb Neisseria gonorrhoeae MS11

50.838

100

0.529
  ssb Neisseria meningitidis MC58

51.429

100

0.523

Multiple sequence alignment