Detailed information NTG0351488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E3H47_RS01235
• Genome accession: NZ_CP038022
• Coordinates: 264838..265698 (-)
• Length: 286 a.a.
• NCBI ID: WP_005016989.1
• Uniprot ID: A0A062C1I7
• Organism: Acinetobacter radioresistens strain DD78
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 259838..270698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3H47_RS15370	-	261884..262021 (+)	138	WP_005405738.1	hypothetical protein	-
E3H47_RS01215 (E3H47_01215)	-	262089..262412 (+)	324	WP_005016998.1	pyrimidine/purine nucleoside phosphorylase	-
E3H47_RS01220 (E3H47_01220)	rlmB	262516..263268 (+)	753	WP_138000430.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
E3H47_RS01225 (E3H47_01225)	-	263293..264228 (+)	936	WP_005016993.1	DMT family transporter	-
E3H47_RS01230 (E3H47_01230)	coaE	264225..264836 (-)	612	WP_005016991.1	dephospho-CoA kinase	-
E3H47_RS01235 (E3H47_01235)	pilD	264838..265698 (-)	861	WP_005016989.1	A24 family peptidase	Machinery gene
E3H47_RS01240 (E3H47_01240)	pilC	265698..266924 (-)	1227	WP_005016988.1	type II secretion system F family protein	Machinery gene
E3H47_RS01245 (E3H47_01245)	pilB	266954..268663 (-)	1710	WP_005023073.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E3H47_RS01250 (E3H47_01250)	tpiA	268952..269746 (+)	795	WP_005023075.1	triose-phosphate isomerase	-
E3H47_RS01255 (E3H47_01255)	secG	269757..270086 (+)	330	WP_138000431.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31915.24 Da
• Isoelectric Point: 7.4686

>NTDB_id=351488 E3H47_RS01235 WP_005016989.1 264838..265698(-) (pilD) [Acinetobacter radioresistens strain DD78]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPASTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNSYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=351488 E3H47_RS01235 WP_005016989.1 264838..265698(-) (pilD) [Acinetobacter radioresistens strain DD78]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTCACGCTCAGCTATCCGGCTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTAGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACACAACTGCTTCCAGACCGG
TATACCCTGCCGCTTGCCGCCCTAGGCCTAGCTCTGAACAGTTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTATATTATCTGTTTAAAGTCATCACCGGTAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTTGCCTTTGGTCCCTATATTGCGAT
TGCCGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGGGAGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A062C1I7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.72	100	0.797
pilD	Acinetobacter baumannii D1279779	78.671	100	0.787
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.087	96.503	0.493
pilD	Neisseria gonorrhoeae MS11	47.312	97.552	0.462