Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GL187_RS07970 Genome accession   NZ_CP046379
Coordinates   1581895..1582491 (-) Length   198 a.a.
NCBI ID   WP_024477857.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1576895..1587491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS07950 (GL187_08085) - 1577826..1578530 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  GL187_RS07955 (GL187_08090) - 1578621..1579196 (-) 576 WP_000561125.1 NUDIX hydrolase N-terminal domain-containing protein -
  GL187_RS07960 (GL187_08095) - 1579219..1580592 (-) 1374 WP_024477856.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GL187_RS07965 (GL187_08100) - 1580676..1581719 (-) 1044 WP_000814647.1 D-alanine--D-alanine ligase -
  GL187_RS07970 (GL187_08105) recR 1581895..1582491 (-) 597 WP_024477857.1 recombination mediator RecR Machinery gene
  GL187_RS07975 (GL187_08110) pbp2b 1582502..1584559 (-) 2058 WP_078133374.1 penicillin-binding protein 2B -
  GL187_RS07980 (GL187_08115) - 1584759..1585610 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  GL187_RS07985 (GL187_08120) - 1585626..1586510 (-) 885 WP_000222983.1 ROK family protein -
  GL187_RS07990 (GL187_08125) - 1586528..1587445 (-) 918 WP_024477859.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21716.91 Da        Isoelectric Point: 4.5622

>NTDB_id=351489 GL187_RS07970 WP_024477857.1 1581895..1582491(-) (recR) [Streptococcus pneumoniae strain 563]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPVGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=351489 GL187_RS07970 WP_024477857.1 1581895..1582491(-) (recR) [Streptococcus pneumoniae strain 563]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGTTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment