Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E3H47_RS01240 Genome accession   NZ_CP038022
Coordinates   265698..266924 (-) Length   408 a.a.
NCBI ID   WP_005016988.1    Uniprot ID   A0A062BT18
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260698..271924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS15370 - 261884..262021 (+) 138 WP_005405738.1 hypothetical protein -
  E3H47_RS01215 (E3H47_01215) - 262089..262412 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  E3H47_RS01220 (E3H47_01220) rlmB 262516..263268 (+) 753 WP_138000430.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3H47_RS01225 (E3H47_01225) - 263293..264228 (+) 936 WP_005016993.1 DMT family transporter -
  E3H47_RS01230 (E3H47_01230) coaE 264225..264836 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  E3H47_RS01235 (E3H47_01235) pilD 264838..265698 (-) 861 WP_005016989.1 A24 family peptidase Machinery gene
  E3H47_RS01240 (E3H47_01240) pilC 265698..266924 (-) 1227 WP_005016988.1 type II secretion system F family protein Machinery gene
  E3H47_RS01245 (E3H47_01245) pilB 266954..268663 (-) 1710 WP_005023073.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E3H47_RS01250 (E3H47_01250) tpiA 268952..269746 (+) 795 WP_005023075.1 triose-phosphate isomerase -
  E3H47_RS01255 (E3H47_01255) secG 269757..270086 (+) 330 WP_138000431.1 preprotein translocase subunit SecG -
  E3H47_RS01275 (E3H47_01275) rimP 270713..271237 (+) 525 WP_026444081.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45019.50 Da        Isoelectric Point: 9.9504

>NTDB_id=351489 E3H47_RS01240 WP_005016988.1 265698..266924(-) (pilC) [Acinetobacter radioresistens strain DD78]
MAVKKAQMMPTFAYDGVDRKGIKVKGELTAKNMALAKVTLRKQGITIKTIREKRRNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILIIAIAALIF
GFLEAKKRSQKFRDALDRMALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRASNRFPPMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=351489 E3H47_RS01240 WP_005016988.1 265698..266924(-) (pilC) [Acinetobacter radioresistens strain DD78]
ATGGCAGTCAAAAAAGCACAAATGATGCCGACTTTTGCTTATGACGGCGTCGACCGTAAAGGAATTAAAGTTAAAGGGGA
GCTGACAGCCAAGAATATGGCGTTGGCTAAGGTGACTTTGCGCAAGCAAGGAATAACTATCAAAACCATTCGGGAAAAAC
GTCGCAATATTCTAGAAGGCTTGATGAAGAAAAGGGTTTCTACACTAGATATCACTATCTTTACACGTCAGTTGGCCACC
ATGATGAAAGCGGGTGTGCCCCTTGTACAAGGCTTTGAAATTGTCGCTGAAGGTCTCGAAAATCCGGCTATGCGTGAAGT
GGTTTTGGGTATTAAGGCTGAAGTTGAAGGAGGCAATACATTTGCCGGTGCACTGCGTAAATATCCCCAATATTTTGATA
ACCTGTTCTGCTCACTGGTCGAATCTGGTGAACAGTCTGGTGCACTTGAGACCATGCTCGACCGGGTGGCCATCTATAAA
GAAAAGAGTGAACTTCTCAAGCAGAAAATTAAAAAGGCGATGAAATATCCCGCCACAGTTATTGTGGTTGCGGTGATTGT
AACGATTATTCTGATGGTTAAGGTAGTTCCGGTATTCCAGGACCTGTTTAGCTCGTTTGGTGCAGATCTGCCTGCATTTA
CCCAGATGGTTGTCAATATGTCGAACTGGATGCAGAAGTACTGGTTTATTCTCATTATCGCAATTGCTGCTCTTATTTTC
GGTTTTCTTGAAGCCAAAAAGCGGAGCCAGAAGTTCCGTGATGCGCTTGACAGAATGGCTCTTAAACTGCCAATTTTTGG
TGATCTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGTACGCTAGCAACCACATTTGCAGCCGGCGTACCACTTATTG
ATGCGCTGGAATCTACTGCAGGTGCAACTAATAATGTAATTTATGAGCAGGCTGTCATGAAAATCCGGGAAGATGTAGCA
ACCGGTCAGCAGCTTCAGTTTGCTATGCGTGCCTCTAACCGTTTTCCGCCTATGGCAGTACAGATGGTTGCCATTGGAGA
AGAATCGGGCGCCCTTGATGCCATGTTAGATAAAGTCGCGACACATTTTGAAAATGAAGTTGACAATGCCGTTGACGGTC
TGACTTCCATGATGGAACCCCTGATTATGGCAATTCTGGGTGTATTAGTGGGTGGCCTTGTGATCGCCATGTATCTGCCA
ATTTTCCAGATGGGTTCAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BT18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

100

0.909
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

44.118

100

0.441
  pilC Vibrio campbellii strain DS40M4

42.327

99.02

0.419
  pilC Thermus thermophilus HB27

37.406

98.284

0.368

Multiple sequence alignment