Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CAP2UW1_RS00635 Genome accession   NC_013194
Coordinates   144337..144816 (-) Length   159 a.a.
NCBI ID   WP_012806939.1    Uniprot ID   A0A9D8KR51
Organism   Candidatus Accumulibacter phosphatis     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139337..149816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS00615 (CAP2UW1_0120) - 139686..140015 (+) 330 WP_291913221.1 hypothetical protein -
  CAP2UW1_RS00620 (CAP2UW1_0121) - 140097..141995 (+) 1899 WP_012806936.1 diguanylate cyclase -
  CAP2UW1_RS00625 (CAP2UW1_0122) xseA 142173..143582 (+) 1410 WP_012806937.1 exodeoxyribonuclease VII large subunit -
  CAP2UW1_RS00630 (CAP2UW1_0123) - 143673..144260 (+) 588 WP_012806938.1 Fe-Mn family superoxide dismutase -
  CAP2UW1_RS00635 (CAP2UW1_0124) ssb 144337..144816 (-) 480 WP_012806939.1 single-stranded DNA-binding protein Machinery gene
  CAP2UW1_RS00640 (CAP2UW1_0125) - 144867..146072 (-) 1206 WP_012806940.1 MFS transporter -
  CAP2UW1_RS00645 (CAP2UW1_0126) uvrA 146143..149016 (+) 2874 WP_012806941.1 excinuclease ABC subunit UvrA -
  CAP2UW1_RS00655 (CAP2UW1_0127) - 149238..149546 (+) 309 Protein_129 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17352.34 Da        Isoelectric Point: 5.9623

>NTDB_id=35142 CAP2UW1_RS00635 WP_012806939.1 144337..144816(-) (ssb) [Candidatus Accumulibacter phosphatis]
MASVNKVILVGNLGADPETRYSANGDAICNIRMATTDRFRDKASGELKDSTEWHRVVFFGKLAETAGQYLKKGRQIYVEG
RIRTNKWQDKDGNERYTTEIIANEMKMLGSREGMGSPASSESEYGGSMPSSAAPASGAARSAPAKKTPSFDDMDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=35142 CAP2UW1_RS00635 WP_012806939.1 144337..144816(-) (ssb) [Candidatus Accumulibacter phosphatis]
ATGGCTTCGGTCAATAAAGTGATTCTCGTCGGCAACCTTGGTGCGGATCCGGAAACCCGCTATTCGGCCAACGGCGACGC
GATTTGCAACATCAGGATGGCGACTACCGACCGCTTCCGTGACAAGGCATCGGGTGAGCTGAAGGACAGCACCGAATGGC
ACCGCGTCGTCTTCTTCGGCAAGCTGGCCGAGACGGCCGGCCAGTATCTCAAGAAGGGCCGCCAGATCTATGTCGAAGGG
CGCATCCGGACCAACAAGTGGCAGGACAAGGACGGCAACGAGCGCTACACGACCGAGATCATTGCCAACGAAATGAAGAT
GCTCGGTAGCCGCGAAGGCATGGGCTCGCCGGCCAGCAGTGAGAGTGAATACGGCGGCAGCATGCCGTCTTCGGCCGCAC
CCGCCAGCGGTGCGGCACGCTCGGCGCCCGCCAAGAAAACGCCGAGTTTTGACGATATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.328

100

0.516
  ssb Neisseria meningitidis MC58

46.552

100

0.509
  ssb Glaesserella parasuis strain SC1401

45

100

0.509
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.497

Multiple sequence alignment