Detailed information NTG0351368

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EZJ17_RS08300
• Genome accession: NZ_CP038018
• Coordinates: 1608032..1608889 (+)
• Length: 285 a.a.
• NCBI ID: WP_067444241.1
• Uniprot ID: A0AAX1F932
• Organism: Eikenella exigua strain PXX
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1603032..1613889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZJ17_RS08285 (EZJ17_08270)	recJ	1603060..1604757 (+)	1698	WP_067444245.1	single-stranded-DNA-specific exonuclease RecJ	-
EZJ17_RS08290 (EZJ17_08275)	pilF	1605000..1606673 (+)	1674	WP_067441990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EZJ17_RS08295 (EZJ17_08280)	pilG	1606707..1607942 (+)	1236	WP_067444243.1	type II secretion system F family protein	Machinery gene
EZJ17_RS08300 (EZJ17_08285)	pilD	1608032..1608889 (+)	858	WP_067444241.1	A24 family peptidase	Machinery gene
EZJ17_RS08305 (EZJ17_08290)	coaE	1608891..1609496 (+)	606	WP_067444239.1	dephospho-CoA kinase	-
EZJ17_RS08310 (EZJ17_08295)	zapD	1609500..1610276 (+)	777	WP_185737496.1	cell division protein ZapD	-
EZJ17_RS08315 (EZJ17_08300)	yacG	1610273..1610455 (+)	183	WP_067442002.1	DNA gyrase inhibitor YacG	-
EZJ17_RS10355	-	1610378..1610599 (-)	222	WP_167508160.1	hypothetical protein	-
EZJ17_RS08320 (EZJ17_08305)	rlmD	1610523..1611816 (+)	1294	Protein_1631	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
EZJ17_RS08325 (EZJ17_08310)	-	1612030..1612824 (+)	795	WP_067444237.1	thymidylate synthase	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31524.65 Da
• Isoelectric Point: 8.7638

>NTDB_id=351368 EZJ17_RS08300 WP_067444241.1 1608032..1608889(+) (pilD) [Eikenella exigua strain PXX]
MTNLDPEIYIPFAVLLGLLVGSFLNVVIYRLPVMLEKQWRIAAKQHLELPLDEEDQKPFNISTPPSRCPKCGSPVKPWQN
IPIISYLLLRGRCHSCHTPISWRYPAVELLTGILFGIVAWRYGYTWLTLGSLVFTAVLVVLTFIDADTQLLPDQLTLPLI
WLGLLFNWQVGFVSLPSALLGAVVGYLSLWLLFHLFKLITGKEGMGYGDFKLLAALGAWLGVSTLPVIVFVAALVGLVAA
LVMRAAKGQPIAFGPALAIAGWLVFAANSYILQGIQWWLHKSGFI

Nucleotide

• Length: 858 bp

>NTDB_id=351368 EZJ17_RS08300 WP_067444241.1 1608032..1608889(+) (pilD) [Eikenella exigua strain PXX]
ATGACCAATCTTGATCCCGAAATCTACATCCCCTTCGCCGTCCTGCTCGGCCTGCTGGTAGGCAGCTTTCTCAACGTGGT
TATCTACCGCCTGCCGGTCATGCTCGAGAAACAATGGCGTATCGCTGCCAAACAGCATCTTGAACTGCCGCTGGACGAAG
AAGACCAAAAACCATTCAACATCAGCACCCCGCCCTCGCGCTGCCCCAAATGCGGCAGCCCGGTGAAACCGTGGCAAAAT
ATCCCCATCATCAGCTACTTGCTGCTGCGCGGTCGCTGCCACAGCTGCCACACTCCCATCAGCTGGCGTTATCCCGCCGT
TGAGCTGCTCACTGGTATCCTGTTCGGTATCGTCGCCTGGCGCTACGGCTACACTTGGCTCACCCTTGGCAGCCTGGTGT
TCACTGCCGTGCTGGTTGTCCTCACCTTTATCGATGCCGACACCCAGCTTTTGCCCGACCAGCTCACCCTGCCCCTGATT
TGGCTCGGACTGCTGTTCAACTGGCAAGTTGGCTTCGTCAGCCTGCCATCGGCACTGCTCGGCGCCGTGGTCGGCTACTT
GAGCCTTTGGCTGCTGTTCCACCTATTCAAACTCATCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCAAACTACTCG
CCGCACTGGGTGCCTGGCTCGGCGTTAGCACCCTGCCCGTTATTGTTTTCGTGGCTGCCTTAGTTGGCCTGGTTGCCGCC
TTGGTGATGCGTGCCGCCAAAGGCCAGCCCATCGCTTTCGGCCCCGCGCTCGCCATTGCCGGCTGGCTGGTTTTCGCTGC
CAACAGCTATATCCTGCAAGGCATCCAATGGTGGCTGCACAAATCCGGGTTCATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	64.444	94.737	0.611
pilD	Acinetobacter nosocomialis M2	49.265	95.439	0.47
pilD	Acinetobacter baumannii D1279779	48.897	95.439	0.467
pilD	Vibrio cholerae strain A1552	49.621	92.632	0.46
pilD	Vibrio campbellii strain DS40M4	49.049	92.281	0.453