Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AHTJR_RS00875 | Genome accession | NZ_CP038009 |
| Coordinates | 194237..194818 (+) | Length | 193 a.a. |
| NCBI ID | WP_004641476.1 | Uniprot ID | - |
| Organism | Acinetobacter haemolyticus strain TJR01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 189237..199818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AHTJR_RS00850 (AHTJR_00850) | - | 189627..190199 (+) | 573 | WP_134251264.1 | DUF2939 domain-containing protein | - |
| AHTJR_RS00855 (AHTJR_00855) | - | 190255..190608 (+) | 354 | WP_004641483.1 | DUF1304 domain-containing protein | - |
| AHTJR_RS00860 (AHTJR_00860) | tenA | 190760..191434 (-) | 675 | WP_008941060.1 | thiaminase II | - |
| AHTJR_RS00865 (AHTJR_00865) | - | 191607..192689 (+) | 1083 | WP_017396156.1 | DUF475 domain-containing protein | - |
| AHTJR_RS00870 (AHTJR_00870) | - | 192821..194185 (+) | 1365 | WP_134251266.1 | MFS transporter | - |
| AHTJR_RS00875 (AHTJR_00875) | ssb | 194237..194818 (+) | 582 | WP_004641476.1 | single-stranded DNA-binding protein | Machinery gene |
| AHTJR_RS00885 (AHTJR_00885) | - | 195219..196652 (+) | 1434 | WP_134251268.1 | amino acid permease | - |
| AHTJR_RS00890 (AHTJR_00890) | - | 196710..198212 (-) | 1503 | WP_005087113.1 | PLP-dependent aminotransferase family protein | - |
| AHTJR_RS00895 (AHTJR_00895) | gabT | 198367..199659 (+) | 1293 | WP_134251270.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21211.89 Da Isoelectric Point: 6.7311
>NTDB_id=351223 AHTJR_RS00875 WP_004641476.1 194237..194818(+) (ssb) [Acinetobacter haemolyticus strain TJR01]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
Nucleotide
Download Length: 582 bp
>NTDB_id=351223 AHTJR_RS00875 WP_004641476.1 194237..194818(+) (ssb) [Acinetobacter haemolyticus strain TJR01]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAACACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGTAATCCACAAGCTGGAAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCGTTCTAA
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAACACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGTAATCCACAAGCTGGAAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53 |
100 |
0.549 |
| ssb | Vibrio cholerae strain A1552 |
44.335 |
100 |
0.466 |
| ssb | Neisseria meningitidis MC58 |
38.421 |
98.446 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
38.421 |
98.446 |
0.378 |