Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DCC84_RS30435 | Genome accession | NZ_CP038001 |
| Coordinates | 6448866..6449384 (-) | Length | 172 a.a. |
| NCBI ID | WP_003210042.1 | Uniprot ID | A0A1R0G976 |
| Organism | Pseudomonas sp. SXM-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6443866..6454384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCC84_RS30410 (DCC84_30410) | - | 6444080..6445189 (-) | 1110 | WP_134327397.1 | DUF3182 family protein | - |
| DCC84_RS30415 (DCC84_30415) | - | 6445361..6446341 (-) | 981 | WP_134327398.1 | GlxA family transcriptional regulator | - |
| DCC84_RS30420 (DCC84_30420) | - | 6446437..6446988 (+) | 552 | WP_008436449.1 | cysteine hydrolase family protein | - |
| DCC84_RS30425 (DCC84_30425) | tam | 6447001..6447762 (-) | 762 | WP_134327399.1 | trans-aconitate 2-methyltransferase | - |
| DCC84_RS30430 (DCC84_30430) | - | 6447866..6448774 (+) | 909 | WP_177008886.1 | LysR family transcriptional regulator | - |
| DCC84_RS30435 (DCC84_30435) | ssb | 6448866..6449384 (-) | 519 | WP_003210042.1 | single-stranded DNA-binding protein | Machinery gene |
| DCC84_RS30440 (DCC84_30440) | - | 6449394..6450788 (-) | 1395 | WP_003210044.1 | MFS transporter | - |
| DCC84_RS30445 (DCC84_30445) | uvrA | 6450967..6453801 (+) | 2835 | WP_003210046.1 | excinuclease ABC subunit UvrA | - |
| DCC84_RS30450 (DCC84_30450) | bfr | 6453870..6454334 (-) | 465 | WP_003210048.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19131.30 Da Isoelectric Point: 5.9455
>NTDB_id=351191 DCC84_RS30435 WP_003210042.1 6448866..6449384(-) (ssb) [Pseudomonas sp. SXM-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=351191 DCC84_RS30435 WP_003210042.1 6448866..6449384(-) (ssb) [Pseudomonas sp. SXM-1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCAACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCAACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
59.218 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
44.792 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
46.961 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.494 |