Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E2L09_RS11015 Genome accession   NZ_CP037955
Coordinates   2336639..2337145 (-) Length   168 a.a.
NCBI ID   WP_322107451.1    Uniprot ID   -
Organism   Enterococcus hirae strain CQP3-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2331639..2342145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2L09_RS10960 (E2L09_10985) - 2331819..2332328 (-) 510 Protein_2168 transposase -
  E2L09_RS10965 (E2L09_10990) - 2332330..2332572 (+) 243 Protein_2169 ATP-binding protein -
  E2L09_RS10970 (E2L09_10995) - 2332732..2333163 (-) 432 WP_160232037.1 type II toxin-antitoxin system HicB family antitoxin -
  E2L09_RS10975 (E2L09_11000) - 2333197..2333381 (-) 185 Protein_2171 type II toxin-antitoxin system HicA family toxin -
  E2L09_RS10980 (E2L09_11005) - 2333474..2333653 (-) 180 WP_002295613.1 hypothetical protein -
  E2L09_RS13900 (E2L09_11010) - 2333669..2333869 (-) 201 WP_231450497.1 hypothetical protein -
  E2L09_RS10985 (E2L09_11015) - 2334033..2334740 (-) 708 WP_160232036.1 hypothetical protein -
  E2L09_RS10990 (E2L09_11020) - 2334733..2334975 (-) 243 WP_311800559.1 hypothetical protein -
  E2L09_RS10995 (E2L09_11025) - 2334979..2335170 (-) 192 WP_160232034.1 hypothetical protein -
  E2L09_RS11000 (E2L09_11030) - 2335186..2335437 (-) 252 WP_160232033.1 hypothetical protein -
  E2L09_RS11005 (E2L09_11035) - 2335437..2335643 (-) 207 WP_160232032.1 DNA helicase UvrA -
  E2L09_RS11010 (E2L09_11040) - 2336090..2336296 (-) 207 WP_160232031.1 hypothetical protein -
  E2L09_RS11015 (E2L09_11045) ssb 2336639..2337145 (-) 507 WP_322107451.1 single-stranded DNA-binding protein Machinery gene
  E2L09_RS11020 (E2L09_11050) - 2337148..2337501 (-) 354 Protein_2181 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  E2L09_RS11025 (E2L09_11055) - 2337603..2338079 (-) 477 WP_002305045.1 PTS glucose transporter subunit IIA -
  E2L09_RS11030 (E2L09_11060) - 2338092..2339594 (-) 1503 WP_088775768.1 PTS transporter subunit EIIC -
  E2L09_RS11035 (E2L09_11065) - 2339607..2340296 (-) 690 WP_160232030.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  E2L09_RS11040 (E2L09_11070) - 2340461..2341279 (+) 819 WP_081125614.1 MurR/RpiR family transcriptional regulator -
  E2L09_RS11045 (E2L09_11075) - 2341320..2341559 (-) 240 WP_081125613.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18907.80 Da        Isoelectric Point: 10.0660

>NTDB_id=350997 E2L09_RS11015 WP_322107451.1 2336639..2337145(-) (ssb) [Enterococcus hirae strain CQP3-9]
MINNVTLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQNGNREADFINCVIWRKPAETMATLAKKGSLIGVVGRIQTR
TYDNQQGHRVYVTEVVADNFQLLESKAATEAVRTLINRLPIQVPLPLNNGIQTMDWTLHKLHLVDNQSILAMMIYRSKQF
FSIGCIRD

Nucleotide


Download         Length: 507 bp        

>NTDB_id=350997 E2L09_RS11015 WP_322107451.1 2336639..2337145(-) (ssb) [Enterococcus hirae strain CQP3-9]
ATGATCAATAATGTAACTTTAGTAGGACGATTAACCAAAGATCCCGACTTACGTTATACCGCAAGTGGCACAGCAGTGGC
TACTTTTACCCTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCAAACCAGCAGAAACGATGGCGACATTAGCTAAAAAAGGTAGCTTGATCGGCGTTGTCGGACGGATTCAAACGCGG
ACTTATGACAACCAGCAAGGACACCGAGTGTACGTAACAGAAGTTGTGGCTGATAACTTCCAATTATTAGAAAGCAAAGC
AGCGACAGAAGCCGTGCGCACGCTGATCAATCGTCTACCAATCCAAGTACCATTGCCTTTGAACAATGGGATACAAACAA
TGGATTGGACGCTTCACAAACTCCATTTGGTGGACAATCAATCGATATTAGCGATGATGATCTACCGTTCTAAGCAGTTT
TTTTCTATTGGTTGCATTCGTGACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

73.636

65.476

0.482
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.755

63.095

0.446
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.459

66.071

0.393

Multiple sequence alignment