Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E2H98_RS19535 Genome accession   NZ_CP037953
Coordinates   2477737..2478108 (-) Length   123 a.a.
NCBI ID   WP_280529068.1    Uniprot ID   -
Organism   Permianibacter aggregans strain HW001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2472737..2483108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2H98_RS10895 (E2H98_10860) - 2472929..2473687 (+) 759 WP_157591350.1 DUF2884 family protein -
  E2H98_RS10900 (E2H98_10865) nhaA 2473905..2475095 (+) 1191 WP_133589306.1 Na+/H+ antiporter NhaA -
  E2H98_RS10905 (E2H98_10870) rep 2475225..2477228 (-) 2004 WP_198325101.1 DNA helicase Rep -
  E2H98_RS10910 (E2H98_10875) - 2477380..2477568 (-) 189 WP_133589304.1 hypothetical protein -
  E2H98_RS19535 comM 2477737..2478108 (-) 372 WP_280529068.1 hypothetical protein Machinery gene
  E2H98_RS19540 - 2478085..2478405 (-) 321 Protein_2152 ATP-binding protein -
  E2H98_RS10920 (E2H98_10885) - 2478560..2479246 (+) 687 WP_162848157.1 TnsA endonuclease N-terminal domain-containing protein -
  E2H98_RS10925 (E2H98_10890) - 2479234..2481123 (+) 1890 WP_133589298.1 Mu transposase C-terminal domain-containing protein -
  E2H98_RS10930 (E2H98_10895) - 2481175..2482029 (+) 855 WP_269769309.1 TniB family NTP-binding protein -
  E2H98_RS19545 - 2482182..2482601 (+) 420 Protein_2156 TniQ family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14002.95 Da        Isoelectric Point: 9.3538

>NTDB_id=350954 E2H98_RS19535 WP_280529068.1 2477737..2478108(-) (comM) [Permianibacter aggregans strain HW001]
MHVEVPPVPKEQLLNPRGQQEVGSAEVRQKVDMARDRQQQRGRLNHQLSPQEIQQHCALADADRQLLETALDKLGLSARA
CHRILRVARTIADLSQSDNIGRSHLLEALSYRRLERLQQALAF

Nucleotide


Download         Length: 372 bp        

>NTDB_id=350954 E2H98_RS19535 WP_280529068.1 2477737..2478108(-) (comM) [Permianibacter aggregans strain HW001]
ATGCACGTTGAAGTCCCTCCCGTTCCGAAAGAGCAGTTACTGAACCCGCGTGGCCAGCAGGAAGTGGGTTCTGCCGAAGT
CCGGCAAAAAGTGGACATGGCGCGCGACCGTCAGCAGCAGCGCGGCCGCCTGAATCACCAGCTGAGCCCGCAGGAAATCC
AGCAGCATTGTGCGCTCGCTGACGCGGATCGTCAGTTGCTGGAAACGGCCTTGGACAAGCTGGGGTTATCGGCCCGGGCC
TGCCACCGGATACTGCGTGTGGCGCGGACGATTGCCGATTTGTCACAAAGTGACAATATTGGGCGCTCACACTTGCTGGA
GGCGCTGAGCTATAGACGGCTGGAACGCTTACAACAGGCACTTGCGTTTTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(23-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.78

100

0.488
  comM Haemophilus influenzae Rd KW20

47.967

100

0.48
  comM Glaesserella parasuis strain SC1401

47.541

99.187

0.472
  comM Vibrio campbellii strain DS40M4

45.902

99.187

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.149

98.374

0.415

Multiple sequence alignment