Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E2H98_RS19535 Genome accession   NZ_CP037953
Coordinates   2477737..2478108 (-) Length   123 a.a.
NCBI ID   WP_280529068.1    Uniprot ID   -
Organism   Permianibacter aggregans strain HW001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2478560..2513162 2477737..2478108 flank 452


Gene organization within MGE regions


Location: 2477737..2513162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2H98_RS19535 comM 2477737..2478108 (-) 372 WP_280529068.1 hypothetical protein Machinery gene
  E2H98_RS19540 - 2478085..2478405 (-) 321 Protein_2152 ATP-binding protein -
  E2H98_RS10920 (E2H98_10885) - 2478560..2479246 (+) 687 WP_162848157.1 TnsA endonuclease N-terminal domain-containing protein -
  E2H98_RS10925 (E2H98_10890) - 2479234..2481123 (+) 1890 WP_133589298.1 Mu transposase C-terminal domain-containing protein -
  E2H98_RS10930 (E2H98_10895) - 2481175..2482029 (+) 855 WP_269769309.1 TniB family NTP-binding protein -
  E2H98_RS19545 - 2482182..2482601 (+) 420 Protein_2156 TniQ family protein -
  E2H98_RS19360 - 2482734..2483228 (+) 495 WP_232475408.1 hypothetical protein -
  E2H98_RS10940 (E2H98_10905) - 2483467..2484228 (-) 762 WP_157591352.1 HNH endonuclease -
  E2H98_RS10945 (E2H98_10910) - 2484694..2485407 (+) 714 WP_133589290.1 DUF1524 domain-containing protein -
  E2H98_RS10950 (E2H98_10915) - 2486523..2486738 (+) 216 WP_133589288.1 hypothetical protein -
  E2H98_RS10955 - 2486926..2487084 (+) 159 WP_157591353.1 hypothetical protein -
  E2H98_RS10960 (E2H98_10920) - 2487542..2487742 (-) 201 WP_157591354.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  E2H98_RS10965 (E2H98_10925) - 2487862..2488599 (+) 738 WP_133589284.1 DUF6088 family protein -
  E2H98_RS10970 (E2H98_10930) - 2488784..2489161 (+) 378 WP_133589282.1 hypothetical protein -
  E2H98_RS10975 (E2H98_10935) - 2489299..2489535 (-) 237 WP_133589280.1 XRE family transcriptional regulator -
  E2H98_RS10980 (E2H98_10940) - 2489797..2490030 (-) 234 Protein_2166 SOS response-associated peptidase family protein -
  E2H98_RS10985 (E2H98_10945) istB 2490280..2491059 (-) 780 WP_133593992.1 IS21-like element helper ATPase IstB -
  E2H98_RS10990 (E2H98_10950) istA 2491049..2492566 (-) 1518 WP_133593990.1 IS21 family transposase -
  E2H98_RS10995 (E2H98_10955) - 2492618..2492848 (+) 231 WP_133590995.1 hypothetical protein -
  E2H98_RS11000 (E2H98_10960) - 2493021..2493356 (+) 336 WP_133590997.1 hypothetical protein -
  E2H98_RS11005 (E2H98_10965) - 2493358..2493687 (+) 330 WP_133590999.1 hypothetical protein -
  E2H98_RS11010 (E2H98_10970) - 2494235..2494540 (-) 306 WP_133591001.1 hypothetical protein -
  E2H98_RS11015 (E2H98_10975) - 2495229..2495933 (-) 705 WP_133591003.1 hypothetical protein -
  E2H98_RS11020 (E2H98_10980) - 2496009..2497109 (-) 1101 WP_157591355.1 Wadjet anti-phage system protein JetD domain-containing protein -
  E2H98_RS11025 (E2H98_10985) - 2497102..2501994 (-) 4893 WP_133591007.1 hypothetical protein -
  E2H98_RS11030 (E2H98_10990) - 2501995..2502789 (-) 795 WP_133591009.1 hypothetical protein -
  E2H98_RS11035 (E2H98_10995) - 2502789..2504141 (-) 1353 WP_133591011.1 hypothetical protein -
  E2H98_RS11040 (E2H98_11000) - 2504751..2505008 (+) 258 WP_133591013.1 hypothetical protein -
  E2H98_RS11045 (E2H98_11005) - 2505121..2505345 (-) 225 WP_133591014.1 hypothetical protein -
  E2H98_RS11050 (E2H98_11010) - 2505418..2506683 (-) 1266 WP_133591016.1 hypothetical protein -
  E2H98_RS11055 (E2H98_11015) - 2506797..2507714 (-) 918 WP_133591018.1 hypothetical protein -
  E2H98_RS11060 (E2H98_11020) - 2508651..2509496 (-) 846 Protein_2182 YifB family Mg chelatase-like AAA ATPase -
  E2H98_RS11065 (E2H98_11025) ubiK 2509606..2509851 (-) 246 WP_133591022.1 ubiquinone biosynthesis accessory factor UbiK -
  E2H98_RS11070 (E2H98_11030) - 2509905..2510348 (+) 444 WP_133591024.1 DUF4124 domain-containing protein -
  E2H98_RS11075 (E2H98_11035) speA 2510507..2512399 (+) 1893 WP_133591026.1 biosynthetic arginine decarboxylase -
  E2H98_RS11080 (E2H98_11040) - 2512477..2512731 (+) 255 WP_133591028.1 DUF6489 family protein -
  E2H98_RS11085 (E2H98_11045) - 2512767..2513162 (+) 396 WP_133591030.1 DUF6869 domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14002.95 Da        Isoelectric Point: 9.3538

>NTDB_id=350954 E2H98_RS19535 WP_280529068.1 2477737..2478108(-) (comM) [Permianibacter aggregans strain HW001]
MHVEVPPVPKEQLLNPRGQQEVGSAEVRQKVDMARDRQQQRGRLNHQLSPQEIQQHCALADADRQLLETALDKLGLSARA
CHRILRVARTIADLSQSDNIGRSHLLEALSYRRLERLQQALAF

Nucleotide


Download         Length: 372 bp        

>NTDB_id=350954 E2H98_RS19535 WP_280529068.1 2477737..2478108(-) (comM) [Permianibacter aggregans strain HW001]
ATGCACGTTGAAGTCCCTCCCGTTCCGAAAGAGCAGTTACTGAACCCGCGTGGCCAGCAGGAAGTGGGTTCTGCCGAAGT
CCGGCAAAAAGTGGACATGGCGCGCGACCGTCAGCAGCAGCGCGGCCGCCTGAATCACCAGCTGAGCCCGCAGGAAATCC
AGCAGCATTGTGCGCTCGCTGACGCGGATCGTCAGTTGCTGGAAACGGCCTTGGACAAGCTGGGGTTATCGGCCCGGGCC
TGCCACCGGATACTGCGTGTGGCGCGGACGATTGCCGATTTGTCACAAAGTGACAATATTGGGCGCTCACACTTGCTGGA
GGCGCTGAGCTATAGACGGCTGGAACGCTTACAACAGGCACTTGCGTTTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(23-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.78

100

0.488
  comM Haemophilus influenzae Rd KW20

47.967

100

0.48
  comM Glaesserella parasuis strain SC1401

47.541

99.187

0.472
  comM Vibrio campbellii strain DS40M4

45.902

99.187

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.149

98.374

0.415

Multiple sequence alignment