Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KKOR_RS11280 Genome accession   NC_013166
Coordinates   2438053..2439120 (-) Length   355 a.a.
NCBI ID   WP_015781259.1    Uniprot ID   C7R7X1
Organism   Kangiella koreensis DSM 16069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433053..2444120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKOR_RS11255 (Kkor_2240) aroK 2433554..2434078 (-) 525 WP_015781254.1 shikimate kinase AroK -
  KKOR_RS11260 (Kkor_2241) - 2434175..2436280 (-) 2106 WP_015781255.1 type IV pilus secretin PilQ -
  KKOR_RS11265 (Kkor_2242) - 2436292..2436852 (-) 561 WP_015781256.1 pilus assembly protein PilP -
  KKOR_RS11270 (Kkor_2243) - 2436849..2437478 (-) 630 WP_015781257.1 type 4a pilus biogenesis protein PilO -
  KKOR_RS11275 (Kkor_2244) - 2437478..2438053 (-) 576 WP_015781258.1 PilN domain-containing protein -
  KKOR_RS11280 (Kkor_2245) pilM 2438053..2439120 (-) 1068 WP_015781259.1 pilus assembly protein PilM Machinery gene
  KKOR_RS11285 (Kkor_2246) - 2439398..2442001 (+) 2604 WP_187287320.1 penicillin-binding protein 1A -
  KKOR_RS11290 (Kkor_2247) rpmE 2442075..2442284 (-) 210 WP_015781261.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38644.04 Da        Isoelectric Point: 4.4911

>NTDB_id=35092 KKOR_RS11280 WP_015781259.1 2438053..2439120(-) (pilM) [Kangiella koreensis DSM 16069]
MVLGLFKKKQLPVIGIDISSTAVKVLQLGKVGNRYRVDRYAVEPLPQGVVVERDIRDTEAVGNAIKKAVDKARTTTKYAA
VAVSGSAVITRSIQMEKGLTDLEMEDVIKVEADQYIPYPLEEVNLDFQVLGDSEVNDNQVDVLLAASRSVNVDSRVDALE
IAGLIPKVVDIEAYAIERAYQLTKKKTVDHIENSVVAIVDIGATMTSLNVLRNGQVIYNREQLFGGNQLTEEIQSRYGLS
YQEAGLAKKQGSLPDDYETEVLIPFAEIITQQVGRALQFFFSASEFNSVNEIILAGGCASIDGLDGMIQEHLGTPTRVAN
PFAEMSISSHVNTQALSADAPAMMISCGLALRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=35092 KKOR_RS11280 WP_015781259.1 2438053..2439120(-) (pilM) [Kangiella koreensis DSM 16069]
ATGGTTCTGGGGTTATTCAAAAAGAAACAATTACCGGTAATCGGTATCGATATCAGTTCGACTGCTGTCAAAGTGCTCCA
GCTTGGTAAAGTGGGCAATCGCTACAGAGTTGATAGATATGCGGTAGAGCCATTGCCACAAGGTGTGGTGGTTGAGCGCG
ATATTCGTGATACTGAAGCTGTGGGCAATGCGATCAAAAAAGCGGTCGATAAAGCTCGCACCACTACAAAATACGCTGCT
GTAGCCGTTTCGGGCTCCGCAGTAATCACTCGTTCTATCCAGATGGAAAAAGGACTGACTGACCTAGAGATGGAGGATGT
CATCAAGGTTGAAGCTGACCAATACATTCCTTATCCATTGGAGGAAGTTAATCTGGACTTCCAGGTATTGGGCGACTCTG
AAGTCAATGATAACCAGGTGGATGTGCTATTAGCTGCGTCTCGAAGCGTGAACGTTGATTCTCGCGTTGATGCGTTGGAA
ATAGCTGGACTGATTCCAAAGGTAGTTGATATTGAGGCTTACGCTATTGAACGGGCATATCAGTTAACTAAAAAGAAAAC
AGTCGACCATATAGAAAATTCAGTGGTAGCCATTGTTGATATTGGCGCGACCATGACCAGCCTGAATGTTTTGCGTAATG
GCCAGGTTATATACAACCGTGAACAATTATTCGGTGGTAACCAGTTAACAGAAGAAATTCAAAGTCGTTATGGGTTGTCA
TATCAAGAAGCGGGTTTAGCTAAGAAGCAAGGTAGCTTACCAGATGATTATGAAACAGAAGTCCTGATTCCATTTGCTGA
AATTATTACTCAGCAAGTGGGTAGAGCTTTGCAGTTCTTCTTCTCGGCAAGTGAGTTTAATTCAGTTAACGAAATTATCT
TAGCGGGTGGTTGTGCTTCCATTGATGGCCTCGATGGCATGATTCAGGAGCACTTGGGAACTCCGACTCGTGTTGCTAAC
CCTTTTGCTGAGATGTCGATTTCTTCTCATGTGAACACTCAGGCTTTAAGTGCGGATGCTCCAGCAATGATGATTAGCTG
CGGACTAGCACTAAGGAGTTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C7R7X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

99.718

0.499
  comM Acinetobacter nosocomialis M2

49.718

99.718

0.496
  comM Acinetobacter baylyi ADP1

47.175

99.718

0.47
  pilM Legionella pneumophila strain ERS1305867

46.61

99.718

0.465

Multiple sequence alignment