Detailed information NTG0350809

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GL183_RS09870
• Genome accession: NZ_CP046355
• Coordinates: 1936092..1937090 (-)
• Length: 332 a.a.
• NCBI ID: WP_338124546.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 475
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1931092..1942090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GL183_RS09850 (GL183_09930)	eeP	1932457..1933716 (-)	1260	WP_000900659.1	RIP metalloprotease RseP	Regulator
GL183_RS09855 (GL183_09935)	-	1933738..1934541 (-)	804	WP_000189848.1	phosphatidate cytidylyltransferase	-
GL183_RS09860 (GL183_09940)	-	1934550..1935308 (-)	759	WP_000466714.1	isoprenyl transferase	-
GL183_RS09865 (GL183_09945)	-	1935539..1936111 (-)	573	WP_197097744.1	nucleotidyltransferase family protein	-
GL183_RS09870 (GL183_09950)	ruvB	1936092..1937090 (-)	999	WP_338124546.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GL183_RS09875 (GL183_09955)	-	1937224..1937316 (+)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
GL183_RS09880 (GL183_09960)	-	1938131..1938547 (-)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
GL183_RS09885 (GL183_09965)	-	1938559..1939254 (-)	696	WP_001144922.1	GNAT family protein	-
GL183_RS09890 (GL183_09970)	leuS	1939448..1941949 (-)	2502	WP_000011766.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37246.69 Da
• Isoelectric Point: 4.5393

>NTDB_id=350809 GL183_RS09870 WP_338124546.1 1936092..1937090(-) (ruvB) [Streptococcus pneumoniae strain 475]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKSGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=350809 GL183_RS09870 WP_338124546.1 1936092..1937090(-) (ruvB) [Streptococcus pneumoniae strain 475]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCCAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAATCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTACT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGCCATATGGAGTATTATGCCCATGCTGGCTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.398	100	0.994
ruvB	Streptococcus pneumoniae D39	99.398	100	0.994
ruvB	Streptococcus pneumoniae TIGR4	98.494	100	0.985
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	51.084	97.289	0.497
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47