Detailed information NTG0350434

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DAIF1_RS16685
• Genome accession: NZ_CP037883
• Coordinates: 3638392..3639765 (+)
• Length: 457 a.a.
• NCBI ID: WP_025874296.1
• Uniprot ID: A0AA43HP51
• Organism: Stenotrophomonas indicatrix strain DAIF1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3633392..3644765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAIF1_RS16670 (DAIF1_33000)	sucD	3634281..3635156 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
DAIF1_RS16675 (DAIF1_33010)	sucC	3635178..3636347 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
DAIF1_RS16680 (DAIF1_33020)	-	3636724..3638337 (+)	1614	WP_134833002.1	ATP-binding protein	-
DAIF1_RS16685 (DAIF1_33030)	pilR	3638392..3639765 (+)	1374	WP_025874296.1	sigma-54 dependent transcriptional regulator	Regulator
DAIF1_RS16690 (DAIF1_33040)	pilB	3640003..3641730 (-)	1728	WP_059064907.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DAIF1_RS16695 (DAIF1_33050)	-	3641950..3642357 (-)	408	WP_080150564.1	pilin	-
DAIF1_RS16700 (DAIF1_33060)	-	3642507..3642929 (-)	423	WP_080150566.1	pilin	-
DAIF1_RS16705 (DAIF1_33070)	pilC	3643281..3644540 (+)	1260	WP_080150567.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49638.94 Da
• Isoelectric Point: 6.6449

>NTDB_id=350434 DAIF1_RS16685 WP_025874296.1 3638392..3639765(+) (pilR) [Stenotrophomonas indicatrix strain DAIF1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=350434 DAIF1_RS16685 WP_025874296.1 3638392..3639765(+) (pilR) [Stenotrophomonas indicatrix strain DAIF1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGTCTGCCCGATGGCAATGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTATCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTTGGCAGCATGGACCTGGCCGTGGAGGCGCTGAAAGCCGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTCCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTCGGCGAATCGCCGGCAATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCATGCACAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGTGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACTGGCGCCCATGCCGACAAGCCGGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAG
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGTGCGGTGGGCGCCCC
CAGCGAAGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCGGCGTCGATCCTGGCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAGGAAG
ACCGTATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCTCGCTCACCGGGCAGCGCTGCGCACGCTGAAGCCGTA
GTCGATCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTATATCGAACAGCTCGAGCGCAGTGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACTGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.596	99.781	0.635
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49