Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0L18_RS07320 Genome accession   NZ_CP037861
Coordinates   1459717..1460217 (-) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida subsp. multocida strain HN01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1454717..1465217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0L18_RS07290 (E0L18_07295) secM 1455545..1455856 (-) 312 WP_139617812.1 secA translation cis-regulator SecM -
  E0L18_RS07295 (E0L18_07300) - 1455949..1456254 (+) 306 WP_005723691.1 DUF721 domain-containing protein -
  E0L18_RS07300 (E0L18_07305) - 1456301..1457206 (-) 906 WP_005717619.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  E0L18_RS07305 (E0L18_07310) aroB 1457210..1458298 (-) 1089 WP_005717621.1 3-dehydroquinate synthase -
  E0L18_RS07310 (E0L18_07315) aroK 1458315..1458842 (-) 528 WP_005717623.1 shikimate kinase AroK -
  E0L18_RS07315 (E0L18_07320) - 1459025..1459425 (-) 401 Protein_1420 type IV pilus secretin PilQ -
  E0L18_RS07320 (E0L18_07325) ssb 1459717..1460217 (-) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  E0L18_RS07325 (E0L18_07330) uvrA 1460389..1463220 (+) 2832 WP_139617463.1 excinuclease ABC subunit UvrA -
  E0L18_RS07330 (E0L18_07335) sodC 1463291..1463852 (+) 562 Protein_1423 superoxide dismutase [Cu-Zn] SodC -
  E0L18_RS07335 (E0L18_07340) rlmB 1463938..1464675 (-) 738 WP_139617464.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=350253 E0L18_RS07320 WP_005719438.1 1459717..1460217(-) (ssb) [Pasteurella multocida subsp. multocida strain HN01]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=350253 E0L18_RS07320 WP_005719438.1 1459717..1460217(-) (ssb) [Pasteurella multocida subsp. multocida strain HN01]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment