Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BMI_RS05170 Genome accession   NC_013119
Coordinates   1081690..1082196 (-) Length   168 a.a.
NCBI ID   WP_015799632.1    Uniprot ID   C7LC55
Organism   Brucella microti CCM 4915     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1076690..1087196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMI_RS05150 (BMI_I1110) - 1078744..1079373 (+) 630 WP_006070834.1 MarC family protein -
  BMI_RS05155 (BMI_I1111) phnN 1079464..1080042 (-) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  BMI_RS05160 (BMI_I1112) phnF 1080229..1080990 (+) 762 WP_004689719.1 phosphonate metabolism transcriptional regulator PhnF -
  BMI_RS05165 (BMI_I1113) - 1081133..1081534 (+) 402 WP_002969546.1 hypothetical protein -
  BMI_RS16385 - 1081586..1081786 (+) 201 WP_002971429.1 hypothetical protein -
  BMI_RS05170 (BMI_I1114) ssb 1081690..1082196 (-) 507 WP_015799632.1 single-stranded DNA-binding protein Machinery gene
  BMI_RS16390 (BMI_I1115) - 1082764..1082964 (+) 201 WP_002964232.1 hypothetical protein -
  BMI_RS05175 (BMI_I1116) uvrA 1083095..1086019 (+) 2925 WP_004685666.1 excinuclease ABC subunit UvrA -
  BMI_RS05180 (BMI_I1117) - 1086206..1086481 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18352.11 Da        Isoelectric Point: 5.3234

>NTDB_id=35020 BMI_RS05170 WP_015799632.1 1081690..1082196(-) (ssb) [Brucella microti CCM 4915]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSHSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=35020 BMI_RS05170 WP_015799632.1 1081690..1082196(-) (ssb) [Brucella microti CCM 4915]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCACAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C7LC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.133

100

0.506
  ssb Glaesserella parasuis strain SC1401

62.016

76.786

0.476
  ssb Neisseria meningitidis MC58

37.989

100

0.405
  ssb Neisseria gonorrhoeae MS11

37.222

100

0.399

Multiple sequence alignment