Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   GKC13_RS05970 Genome accession   NZ_CP046134
Coordinates   1150264..1150911 (+) Length   215 a.a.
NCBI ID   WP_041827674.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145264..1155911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS05940 (GKC13_06000) - 1145549..1145821 (-) 273 WP_002950398.1 DUF3165 family protein -
  GKC13_RS05945 (GKC13_06005) typA 1145845..1147692 (-) 1848 WP_179971510.1 translational GTPase TypA -
  GKC13_RS05950 (GKC13_06010) - 1147830..1148798 (-) 969 WP_179971509.1 ROK family glucokinase -
  GKC13_RS05955 (GKC13_06015) - 1148791..1148997 (-) 207 WP_002950395.1 YqgQ family protein -
  GKC13_RS05960 (GKC13_06020) - 1149108..1149545 (-) 438 WP_011227072.1 Fur family transcriptional regulator -
  GKC13_RS05965 (GKC13_06025) - 1149634..1150155 (-) 522 WP_011225768.1 Dps family protein -
  GKC13_RS05970 (GKC13_06030) cclA/cilC 1150264..1150911 (+) 648 WP_041827674.1 A24 family peptidase Machinery gene
  GKC13_RS05975 (GKC13_06035) - 1150952..1152331 (-) 1380 WP_179971285.1 serine hydrolase -
  GKC13_RS05980 (GKC13_06040) sodA 1152428..1153033 (-) 606 WP_011680996.1 superoxide dismutase SodA -
  GKC13_RS05985 (GKC13_06045) holA 1153130..1154164 (-) 1035 WP_002946639.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24886.02 Da        Isoelectric Point: 8.5469

>NTDB_id=350181 GKC13_RS05970 WP_041827674.1 1150264..1150911(+) (cclA/cilC) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=350181 GKC13_RS05970 WP_041827674.1 1150264..1150911(+) (cclA/cilC) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386

Multiple sequence alignment