Detailed information NTG0350181

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: E1H28_RS06860
• Genome accession: NZ_CP037840
• Coordinates: 1433768..1434814 (+)
• Length: 348 a.a.
• NCBI ID: WP_003428218.1
• Uniprot ID: A0A031WFI0
• Organism: Clostridioides difficile strain Cd5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1428768..1439814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H28_RS06845 (E1H28_06980)	mnmH	1430565..1431623 (+)	1059	WP_009902410.1	tRNA 2-selenouridine(34) synthase MnmH	-
E1H28_RS06850 (E1H28_06985)	rimO	1431617..1432951 (+)	1335	WP_003433320.1	30S ribosomal protein S12 methylthiotransferase RimO	-
E1H28_RS06855 (E1H28_06990)	pgsA	1432938..1433480 (+)	543	WP_009889106.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
E1H28_RS06860 (E1H28_06995)	recA	1433768..1434814 (+)	1047	WP_003428218.1	recombinase RecA	Machinery gene
E1H28_RS06865 (E1H28_07000)	rny	1434990..1436531 (+)	1542	WP_003428216.1	ribonuclease Y	-
E1H28_RS06870 (E1H28_07005)	-	1436845..1439181 (+)	2337	WP_003438341.1	diguanylate cyclase	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 37377.68 Da
• Isoelectric Point: 4.8236

>NTDB_id=350181 E1H28_RS06860 WP_003428218.1 1433768..1434814(+) (recA) [Clostridioides difficile strain Cd5]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE

Nucleotide

• Length: 1047 bp

>NTDB_id=350181 E1H28_RS06860 WP_003428218.1 1433768..1434814(+) (recA) [Clostridioides difficile strain Cd5]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A0A031WFI0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Streptococcus mutans UA159	66.762	100	0.67
recA	Streptococcus mitis SK321	67.456	97.126	0.655
recA	Streptococcus pneumoniae Rx1	65.507	99.138	0.649
recA	Streptococcus pneumoniae R6	65.507	99.138	0.649
recA	Streptococcus pneumoniae D39	65.507	99.138	0.649
recA	Streptococcus pneumoniae TIGR4	65.507	99.138	0.649
recA	Streptococcus mitis NCTC 12261	68.085	94.54	0.644
recA	Bacillus subtilis subsp. subtilis str. 168	69.565	92.529	0.644
recA	Lactococcus lactis subsp. cremoris KW2	65.569	95.977	0.629
recA	Streptococcus pyogenes NZ131	66.972	93.966	0.629
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.758	94.828	0.624
recA	Latilactobacillus sakei subsp. sakei 23K	64.955	95.115	0.618
recA	Neisseria gonorrhoeae MS11	66.049	93.103	0.615
recA	Neisseria gonorrhoeae MS11	66.049	93.103	0.615
recA	Neisseria gonorrhoeae strain FA1090	66.049	93.103	0.615
recA	Acinetobacter baylyi ADP1	64.396	92.816	0.598
recA	Pseudomonas stutzeri DSM 10701	63.889	93.103	0.595
recA	Helicobacter pylori 26695	61.976	95.977	0.595
recA	Helicobacter pylori strain NCTC11637	61.976	95.977	0.595
recA	Acinetobacter baumannii D1279779	63.777	92.816	0.592
recA	Vibrio cholerae O1 biovar El Tor strain E7946	62.048	95.402	0.592
recA	Vibrio cholerae strain A1552	62.048	95.402	0.592
recA	Glaesserella parasuis strain SC1401	64.174	92.241	0.592
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.272	93.103	0.589
recA	Ralstonia pseudosolanacearum GMI1000	66.558	88.506	0.589
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.681	92.816	0.563