Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   A0073_RS07620 Genome accession   NZ_CP037747
Coordinates   1420131..1421744 (+) Length   537 a.a.
NCBI ID   WP_234981007.1    Uniprot ID   -
Organism   Campylobacter helveticus strain 2013D-9613     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415131..1426744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0073_RS07600 (A0073_07600) - 1417278..1417577 (+) 300 WP_131937450.1 transformation system protein -
  A0073_RS07605 (A0073_07605) ctsD 1417555..1418964 (+) 1410 WP_131937452.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A0073_RS07610 (A0073_07610) - 1418957..1419562 (+) 606 WP_131937454.1 ATP-binding protein -
  A0073_RS07615 (A0073_07615) - 1419565..1420131 (+) 567 WP_082200592.1 transformation system protein -
  A0073_RS07620 (A0073_07620) ctsE 1420131..1421744 (+) 1614 WP_234981007.1 GspE/PulE family protein Machinery gene
  A0073_RS07625 (A0073_07625) ctsF 1421741..1422928 (+) 1188 WP_082200590.1 type II secretion system F family protein Machinery gene
  A0073_RS07630 (A0073_07630) - 1422954..1424786 (-) 1833 WP_131937456.1 flagellin -
  A0073_RS07635 (A0073_07635) - 1424944..1425576 (-) 633 WP_082200588.1 hypothetical protein -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 61155.02 Da        Isoelectric Point: 6.0205

>NTDB_id=349889 A0073_RS07620 WP_234981007.1 1420131..1421744(+) (ctsE) [Campylobacter helveticus strain 2013D-9613]
MEFLKNLGFNEEVQEGFKDEALRRFLFELYLKDGLDLNVLFSNLGVRSEEFLRALAQHLGLEFVEFEEIDENLCDLFAFS
LLWQNQILPLQKDAESIFILSAKPLNLELLSKIEHLFRSKFIKNALCDVYQLNQNLNKLYIKQRLKELSTNLKQELNANL
KEDGQSSVSLLFEFILQEALKLNASDVHIESLENEALIRFRVDGILRLFCTLEEQLYQALVFHIKLLAHLNVAESRKAQD
GSFNKSFEGVEYDFRISTLPLQKGESVVLRILKQDLKLLSLENLHFSKENLTLVQKNIKKPFGMILLTGPTGSGKSTTLY
ACLKSLACVEKKIITAEEPIEYKMPQIQQIALNSKAGLDFSNALRAILRQDPDVIMVGEIRDEESLDIALKGAQTGHLIL
STLHTNDALSTIERLLDMKAKPYLIASSLNLIIAQRLVRKLCPHCKIKSVRNDEFKGEFYEAKGCENCHFSGFLGRELIS
ECLELDEGLKELVRKNASKNELLNHAKTRGFLSMFELGLEKARLGIISIDELMRVVG

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=349889 A0073_RS07620 WP_234981007.1 1420131..1421744(+) (ctsE) [Campylobacter helveticus strain 2013D-9613]
ATGGAATTTTTAAAGAATTTAGGTTTTAATGAAGAGGTGCAAGAGGGCTTTAAAGATGAAGCTTTGAGGCGTTTTTTGTT
TGAGCTTTATTTAAAAGATGGGCTTGATTTAAATGTGCTTTTTTCAAATTTGGGTGTAAGGAGCGAGGAATTTTTAAGGG
CTTTGGCACAGCATTTAGGCTTGGAATTTGTAGAATTTGAGGAGATAGATGAGAATTTATGCGATTTGTTTGCCTTTTCT
TTGCTTTGGCAAAATCAAATTCTCCCCCTACAAAAAGATGCAGAAAGCATTTTTATCCTTTCTGCTAAACCTCTAAATTT
AGAGCTTTTAAGTAAGATAGAGCATCTTTTTCGCTCCAAATTTATCAAAAATGCGCTTTGTGATGTTTATCAGTTAAATC
AAAACTTAAACAAGCTTTATATCAAGCAAAGATTAAAAGAATTAAGCACCAATTTAAAGCAAGAATTAAATGCGAATTTG
AAAGAGGACGGGCAAAGTAGCGTGAGCTTGCTATTTGAGTTTATCTTGCAAGAAGCATTAAAGCTAAATGCAAGCGATGT
GCATATAGAAAGCTTGGAAAATGAGGCTTTAATACGCTTTCGTGTGGATGGAATTTTACGCCTTTTTTGCACTTTAGAGG
AGCAGCTTTATCAAGCCCTAGTTTTTCACATTAAGCTTTTGGCGCACTTAAATGTTGCTGAGAGTAGAAAAGCACAAGAT
GGAAGTTTTAATAAGAGCTTTGAGGGTGTGGAGTATGATTTTCGTATTTCAACCTTACCTTTGCAAAAGGGCGAAAGTGT
GGTGCTTAGGATATTAAAGCAGGATTTGAAGCTTTTAAGTCTTGAAAACTTGCATTTTTCTAAAGAAAATTTAACTTTAG
TGCAGAAAAATATCAAAAAGCCTTTTGGTATGATACTACTAACCGGTCCCACTGGTAGCGGTAAAAGCACGACTTTATAT
GCTTGTTTAAAAAGTCTTGCCTGTGTGGAGAAGAAAATCATTACCGCAGAAGAACCCATAGAGTATAAAATGCCTCAAAT
TCAGCAAATCGCGCTTAATTCTAAGGCGGGACTTGATTTTAGTAATGCCTTAAGAGCGATTTTAAGGCAGGATCCTGATG
TGATTATGGTGGGGGAAATCCGCGATGAAGAGAGCCTTGATATAGCCCTTAAAGGCGCACAAACGGGACATTTAATCCTT
AGCACTTTACATACAAATGACGCGCTTTCTACCATAGAGCGTTTGCTTGATATGAAAGCAAAGCCTTATTTAATCGCCTC
TTCGCTTAATCTCATCATTGCCCAACGCCTTGTAAGAAAGCTTTGTCCGCATTGTAAAATTAAAAGTGTGAGAAATGATG
AATTTAAAGGCGAGTTTTATGAAGCTAAGGGGTGCGAGAATTGCCATTTTAGCGGCTTTTTGGGTAGGGAATTAATTAGC
GAGTGTTTGGAGCTTGATGAGGGCTTAAAAGAATTAGTGCGTAAAAATGCAAGTAAAAATGAGCTTTTAAACCACGCAAA
AACAAGAGGCTTTTTAAGTATGTTTGAGCTAGGACTTGAAAAAGCGAGGCTTGGGATTATTAGCATTGATGAGCTTATGA
GGGTGGTTGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(45-144)

Type II/IV secretion system protein (T2SSE)

(175-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

54.688

95.345

0.521
  pilB Legionella pneumophila strain ERS1305867

37.383

99.628

0.372
  pilB Vibrio cholerae strain A1552

37.765

96.648

0.365
  pilB Vibrio campbellii strain DS40M4

36.742

98.324

0.361

Multiple sequence alignment