Detailed information NTG0349890

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: A0073_RS07625
• Genome accession: NZ_CP037747
• Coordinates: 1421741..1422928 (+)
• Length: 395 a.a.
• NCBI ID: WP_082200590.1
• Uniprot ID: A0AAX2UL51
• Organism: Campylobacter helveticus strain 2013D-9613
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1416741..1427928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0073_RS07600 (A0073_07600)	-	1417278..1417577 (+)	300	WP_131937450.1	transformation system protein	-
A0073_RS07605 (A0073_07605)	ctsD	1417555..1418964 (+)	1410	WP_131937452.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A0073_RS07610 (A0073_07610)	-	1418957..1419562 (+)	606	WP_131937454.1	ATP-binding protein	-
A0073_RS07615 (A0073_07615)	-	1419565..1420131 (+)	567	WP_082200592.1	transformation system protein	-
A0073_RS07620 (A0073_07620)	ctsE	1420131..1421744 (+)	1614	WP_234981007.1	GspE/PulE family protein	Machinery gene
A0073_RS07625 (A0073_07625)	ctsF	1421741..1422928 (+)	1188	WP_082200590.1	type II secretion system F family protein	Machinery gene
A0073_RS07630 (A0073_07630)	-	1422954..1424786 (-)	1833	WP_131937456.1	flagellin	-
A0073_RS07635 (A0073_07635)	-	1424944..1425576 (-)	633	WP_082200588.1	hypothetical protein	-
A0073_RS07640 (A0073_07640)	truD	1425620..1426750 (-)	1131	WP_082200587.1	tRNA pseudouridine(13) synthase TruD	-
A0073_RS07645 (A0073_07645)	-	1426719..1427534 (-)	816	WP_131937458.1	thiamine-phosphate kinase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 45027.54 Da
• Isoelectric Point: 9.7175

>NTDB_id=349890 A0073_RS07625 WP_082200590.1 1421741..1422928(+) (ctsF) [Campylobacter helveticus strain 2013D-9613]
MKTYELYYLKNQQKLRKILKAKNLNTAQAMALKQNLQILSLKELKKQSKVKINDMLFCAFFKEFALLLNAGLSVKEALNL
MGESSVKSLRGVLGELSANLNSGQNLSQAFSNLSLNLNLSELSLIKMGEKTGNLALIFSQIAELREKLILNKKRFKKAIH
YPCMVFVALFGAFLFLMFFVVPEFLELFESLGANLPFITQVLLSFYMFLSAYYLPLIFGFVGFLSVFVLAYKKSEKFAFL
VDFMLLKLPFFSRFILYNQNYYFFMIFSLLLQSGNALSHAFELASSSVENQFLKEKFRQIHLSLEQGLELSLAFKKAGIF
DELVISLLHSAMKSASLDNLSAKIAHFYEEKQEDLLDKFLHFLEPLMTLLVGILVLFLALGIFLPMWELSSGANV

Nucleotide

• Length: 1188 bp

>NTDB_id=349890 A0073_RS07625 WP_082200590.1 1421741..1422928(+) (ctsF) [Campylobacter helveticus strain 2013D-9613]
GTGAAAACTTATGAGCTTTATTATCTTAAAAATCAACAAAAATTAAGAAAAATTCTAAAAGCGAAAAATCTTAACACCGC
CCAGGCAATGGCTTTAAAGCAGAATTTACAAATTTTAAGCCTTAAAGAATTAAAAAAACAAAGCAAGGTCAAGATAAACG
ATATGCTTTTTTGTGCGTTTTTTAAGGAATTTGCCCTTTTGCTTAATGCAGGTTTGAGCGTGAAAGAAGCTTTAAATTTG
ATGGGTGAAAGTTCAGTAAAGAGCCTAAGGGGTGTGCTGGGGGAATTAAGTGCGAATTTAAATTCTGGGCAGAATTTAAG
TCAAGCATTTAGCAATTTATCTTTAAATTTAAATTTGAGTGAGTTGAGTTTGATTAAAATGGGTGAAAAAACGGGAAATT
TAGCTCTCATTTTTTCTCAAATCGCAGAGCTTAGAGAAAAGCTTATTTTAAATAAAAAGCGTTTTAAAAAGGCGATTCAT
TATCCTTGTATGGTTTTTGTGGCACTTTTTGGGGCGTTTTTATTTTTGATGTTTTTTGTTGTGCCTGAATTTTTAGAACT
TTTTGAAAGTTTGGGAGCAAATTTGCCTTTTATCACTCAGGTATTACTGAGTTTTTATATGTTTTTAAGTGCGTATTATT
TGCCCTTGATTTTTGGTTTTGTGGGGTTTTTAAGCGTTTTCGTTTTGGCGTATAAAAAGAGTGAAAAATTTGCTTTTTTG
GTGGATTTTATGCTTTTAAAGCTTCCATTTTTTTCGCGTTTTATACTTTATAATCAAAATTATTATTTTTTTATGATTTT
TTCTTTACTTTTGCAAAGTGGTAATGCACTTTCTCACGCTTTTGAGTTGGCAAGTTCTAGCGTAGAAAATCAATTTTTAA
AAGAGAAATTTAGACAAATTCATCTTTCTTTAGAGCAGGGCTTAGAGCTTTCTTTGGCTTTTAAAAAGGCAGGGATTTTT
GATGAGCTTGTCATTTCTTTGCTTCATAGTGCGATGAAAAGTGCTTCGTTGGATAATTTAAGTGCCAAGATAGCACATTT
TTATGAAGAAAAACAAGAAGATTTGTTAGATAAATTCTTGCATTTTTTAGAGCCTTTGATGACTTTGTTGGTGGGAATTT
TGGTTTTATTTTTAGCTTTGGGGATATTTTTACCGATGTGGGAGTTAAGCAGCGGGGCAAATGTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (60-182)

• Type II secretion system (T2SS), protein F (T2SSF) (266-385)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	53.671	100	0.537