Detailed information NTG0349888

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: A0073_RS07605
• Genome accession: NZ_CP037747
• Coordinates: 1417555..1418964 (+)
• Length: 469 a.a.
• NCBI ID: WP_131937452.1
• Uniprot ID: -
• Organism: Campylobacter helveticus strain 2013D-9613
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1412555..1423964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0073_RS07595 (A0073_07595)	nifJ	1413718..1417281 (+)	3564	WP_131937448.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
A0073_RS07600 (A0073_07600)	-	1417278..1417577 (+)	300	WP_131937450.1	transformation system protein	-
A0073_RS07605 (A0073_07605)	ctsD	1417555..1418964 (+)	1410	WP_131937452.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A0073_RS07610 (A0073_07610)	-	1418957..1419562 (+)	606	WP_131937454.1	ATP-binding protein	-
A0073_RS07615 (A0073_07615)	-	1419565..1420131 (+)	567	WP_082200592.1	transformation system protein	-
A0073_RS07620 (A0073_07620)	ctsE	1420131..1421744 (+)	1614	WP_234981007.1	GspE/PulE family protein	Machinery gene
A0073_RS07625 (A0073_07625)	ctsF	1421741..1422928 (+)	1188	WP_082200590.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 52575.13 Da
• Isoelectric Point: 5.2114

>NTDB_id=349888 A0073_RS07605 WP_131937452.1 1417555..1418964(+) (ctsD) [Campylobacter helveticus strain 2013D-9613]
MLRLVLIKFVFCLSFLYGFDCQKRLFDINIKESLSIEEALDELASYCTFSIVVKDEFAKNELTKMQKSLYIHQMTLEELF
KLLLKENNLNYEFDGKILSIWGISTQIFKLSYITSIREGQSIIKASVDSKPRQNEADLSDENDDNMIKSMEKFDFWQNIE
KEITTLLNAYGETKAPIINANAGIIIVTGTPIQLKKVGEYINRLENRLKKQVIIDVSIIAVSLNENHSSGINWQNFNVDF
ASTTQNGQGSFIQLQSGQGFVKNLGLRANLNFSAVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGT
ENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTIQKKLSTVVSMENNQTL
ILGGLISHNQIKEGSEVSFLSKIPLLGLLFSGDESSSNSTEIVFIITPSIVDKQMGVLSLKDLGFKHYE

Nucleotide

• Length: 1410 bp

>NTDB_id=349888 A0073_RS07605 WP_131937452.1 1417555..1418964(+) (ctsD) [Campylobacter helveticus strain 2013D-9613]
ATGTTAAGATTAGTATTAATTAAATTTGTTTTTTGCTTGAGTTTTCTTTATGGTTTTGATTGTCAAAAAAGACTTTTTGA
TATTAATATAAAAGAAAGTTTAAGTATAGAGGAAGCACTTGATGAACTTGCGAGTTATTGCACCTTTAGTATTGTTGTAA
AAGATGAATTTGCTAAAAATGAGCTGACTAAAATGCAAAAAAGTTTATATATTCATCAAATGACCCTAGAAGAGCTTTTT
AAACTTTTGCTGAAAGAAAATAATTTAAACTATGAATTTGATGGAAAAATTTTAAGCATTTGGGGAATTTCAACTCAAAT
TTTTAAGTTGAGCTACATCACATCTATACGCGAGGGACAAAGCATTATCAAGGCTTCTGTGGATTCTAAGCCAAGACAAA
ATGAGGCTGATTTAAGCGATGAAAATGATGATAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAAATCACAACCCTACTTAATGCTTATGGTGAGACTAAAGCACCGATTATCAATGCAAATGCTGGAATTATCATCGT
TACAGGCACACCTATCCAGCTTAAAAAAGTGGGAGAGTATATTAATAGACTTGAAAATAGACTTAAAAAGCAAGTGATTA
TCGATGTAAGCATCATTGCGGTGAGTTTAAATGAAAATCATTCAAGTGGGATAAATTGGCAAAATTTCAATGTCGATTTT
GCTAGCACAACGCAAAATGGGCAAGGCTCTTTCATCCAGCTTCAAAGCGGACAAGGTTTTGTGAAAAATTTGGGTTTAAG
GGCAAATCTTAATTTTAGTGCCGTGTTAAATTTTCTTTCTCAAAATGGCAAAACGCAAGTGCTTTCAAGTCCAAAGCTTA
TGGCTTTAAATAACCAACAAGCCATCATTTCAGTAGGCGATACGATTAATTACCAAGTGAAAGAAAGCTCCAAAGGCACA
GAAAATGGCACAACTGTGAGTGAGAGTTTTAGCAATTATTCTATTTTTGTGGGAATTTTATTAAGTATTTTGCCCGAAAT
TTCAGATGATAATAAAATTATGCTTCGTATTAATCCAAGCCTAAGCGATTTTAAATATCCTCAAGACAATCAAAGGCAAA
GCAGTCCCCGCACCATAGCCCCAGATACCATACAAAAAAAGCTTTCCACCGTTGTTTCTATGGAAAATAACCAAACGCTA
ATTTTAGGCGGACTCATCTCACATAATCAAATCAAAGAAGGGAGTGAAGTAAGCTTTCTTTCTAAAATTCCACTGCTTGG
GCTTTTATTTAGTGGCGATGAGTCAAGTTCAAATAGCACCGAAATCGTTTTCATCATCACGCCTAGCATAGTGGATAAAC
AAATGGGTGTTTTAAGTCTTAAGGATTTAGGGTTTAAGCATTATGAGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (279-452)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	72.939	100	0.736