Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMO_RS07085 Genome accession   NC_013016
Coordinates   1365633..1366157 (-) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis alpha14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1360633..1371157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS07075 (NMO_1290) fumC 1362732..1364120 (+) 1389 WP_002241750.1 class II fumarate hydratase -
  NMO_RS07080 (NMO_1291) - 1364185..1365108 (-) 924 WP_002219053.1 DMT family transporter -
  NMO_RS07085 (NMO_1292) ssb 1365633..1366157 (-) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  NMO_RS07090 (NMO_1293) - 1366161..1367543 (-) 1383 WP_048816220.1 MFS transporter -
  NMO_RS07095 (NMO_1294) - 1367654..1368277 (-) 624 WP_002212974.1 lytic transglycosylase domain-containing protein -
  NMO_RS14760 (NMO_1295) - 1368966..1369387 (-) 422 Protein_1355 hypothetical protein -
  NMO_RS07115 (NMO_1296) - 1369424..1369915 (-) 492 WP_002239882.1 REP-associated tyrosine transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=34977 NMO_RS07085 WP_002212976.1 1365633..1366157(-) (ssb) [Neisseria meningitidis alpha14]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=34977 NMO_RS07085 WP_002212976.1 1365633..1366157(-) (ssb) [Neisseria meningitidis alpha14]
ATGTCATTGAACAAAGTCATCCTCATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACCATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46

Multiple sequence alignment