Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0Z08_RS17605 Genome accession   NZ_CP037424
Coordinates   3530675..3531259 (-) Length   194 a.a.
NCBI ID   WP_058951561.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3522595..3530216 3530675..3531259 flank 459


Gene organization within MGE regions


Location: 3522595..3531259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS17565 (E0Z08_17565) - 3522595..3523670 (+) 1076 WP_101598933.1 IS3 family transposase -
  E0Z08_RS17570 (E0Z08_17570) - 3524176..3524646 (+) 471 WP_058951564.1 TIR domain-containing protein -
  E0Z08_RS17575 (E0Z08_17575) - 3524655..3525521 (+) 867 WP_058952493.1 DUF4231 domain-containing protein -
  E0Z08_RS17580 (E0Z08_17580) - 3525529..3526065 (-) 537 WP_213075194.1 hypothetical protein -
  E0Z08_RS17585 (E0Z08_17585) - 3526143..3527111 (+) 969 WP_005804963.1 IS30 family transposase -
  E0Z08_RS17590 (E0Z08_17590) - 3527102..3529189 (-) 2088 WP_131230784.1 toll/interleukin-1 receptor domain-containing protein -
  E0Z08_RS17595 (E0Z08_17595) - 3529347..3530279 (-) 933 WP_131230786.1 IS5-like element ISAba12 family transposase -
  E0Z08_RS19285 (E0Z08_17600) - 3530335..3530523 (-) 189 Protein_3407 site-specific integrase -
  E0Z08_RS17605 (E0Z08_17605) ssb 3530675..3531259 (-) 585 WP_058951561.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21314.06 Da        Isoelectric Point: 6.4819

>NTDB_id=349707 E0Z08_RS17605 WP_058951561.1 3530675..3531259(-) (ssb) [Acinetobacter johnsonii strain M19]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGANPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=349707 E0Z08_RS17605 WP_058951561.1 3530675..3531259(-) (ssb) [Acinetobacter johnsonii strain M19]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACTACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGCCAATCCTGCAGCAGGTAATAGCAACAATCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCCAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423

Multiple sequence alignment