Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJD96_RS22040 Genome accession   NZ_CP046009
Coordinates   4263600..4264136 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 1919D62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4258600..4269136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD96_RS22020 (GJD96_22040) soxR 4260328..4260792 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  GJD96_RS22025 (GJD96_22045) soxS 4260878..4261201 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  GJD96_RS22030 (GJD96_22050) pdeC 4261204..4262790 (-) 1587 WP_096310620.1 c-di-GMP phosphodiesterase PdeC -
  GJD96_RS22035 (GJD96_22055) yjcB 4263220..4263501 (+) 282 WP_001295689.1 YjcB family protein -
  GJD96_RS22040 (GJD96_22060) ssb 4263600..4264136 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GJD96_RS22045 (GJD96_22065) uvrA 4264390..4267212 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  GJD96_RS22050 (GJD96_22070) yjbR 4267247..4267603 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  GJD96_RS22055 (GJD96_22075) yjbQ 4267607..4268023 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GJD96_RS22060 (GJD96_22080) aphA 4268134..4268847 (-) 714 WP_095885674.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=349564 GJD96_RS22040 WP_000168305.1 4263600..4264136(-) (ssb) [Escherichia coli strain 1919D62]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=349564 GJD96_RS22040 WP_000168305.1 4263600..4264136(-) (ssb) [Escherichia coli strain 1919D62]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489