Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EE52_RS19770 Genome accession   NZ_CP036542
Coordinates   4464970..4465428 (-) Length   152 a.a.
NCBI ID   WP_032531838.1    Uniprot ID   A0A0I9UL52
Organism   Bacteroides fragilis strain DCMOUH0018B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4459970..4470428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE52_RS19750 (EE52_019755) - 4460205..4460420 (+) 216 WP_005776344.1 (4Fe-4S)-binding protein -
  EE52_RS23700 - 4460503..4462809 (-) 2307 WP_044301684.1 hypothetical protein -
  EE52_RS19760 (EE52_019765) - 4462830..4463480 (-) 651 WP_032536358.1 4'-phosphopantetheinyl transferase superfamily protein -
  EE52_RS19765 (EE52_019770) - 4463488..4464834 (-) 1347 WP_022013013.1 gliding motility-associated protein GldE -
  EE52_RS19770 (EE52_019775) ssb 4464970..4465428 (-) 459 WP_032531838.1 single-stranded DNA-binding protein Machinery gene
  EE52_RS19775 (EE52_019780) - 4465516..4467084 (-) 1569 WP_044301668.1 arylsulfatase -
  EE52_RS19780 (EE52_019785) mutY 4467128..4468174 (-) 1047 WP_044301670.1 A/G-specific adenine glycosylase -
  EE52_RS19785 (EE52_019790) - 4468379..4468654 (+) 276 WP_005776335.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16753.73 Da        Isoelectric Point: 5.7512

>NTDB_id=349544 EE52_RS19770 WP_032531838.1 4464970..4465428(-) (ssb) [Bacteroides fragilis strain DCMOUH0018B]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGVGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=349544 EE52_RS19770 WP_032531838.1 4464970..4465428(-) (ssb) [Bacteroides fragilis strain DCMOUH0018B]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAACTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGTCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I9UL52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

41.573

100

0.487
  ssb Neisseria meningitidis MC58

39.205

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.454
  ssb Glaesserella parasuis strain SC1401

37.079

100

0.434

Multiple sequence alignment