Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SYNGTI_RS15200 Genome accession   NC_017038
Coordinates   3281184..3281882 (+) Length   232 a.a.
NCBI ID   WP_010874121.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3276184..3286882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTI_RS15175 (SYNGTI_2929) murC 3277107..3278624 (+) 1518 WP_010874116.1 UDP-N-acetylmuramate--L-alanine ligase -
  SYNGTI_RS15180 (SYNGTI_2930) murB 3278696..3279649 (+) 954 WP_010874117.1 UDP-N-acetylmuramate dehydrogenase -
  SYNGTI_RS15185 (SYNGTI_2931) - 3279671..3280024 (+) 354 WP_010874118.1 hypothetical protein -
  SYNGTI_RS15190 (SYNGTI_2932) bfr 3280159..3280629 (-) 471 WP_010874119.1 bacterioferritin -
  SYNGTI_RS15195 (SYNGTI_2933) - 3280821..3281123 (-) 303 WP_010874120.1 DUF3146 family protein -
  SYNGTI_RS15200 (SYNGTI_2934) recR 3281184..3281882 (+) 699 WP_010874121.1 recombination mediator RecR Machinery gene
  SYNGTI_RS15205 (SYNGTI_2935) - 3282000..3282527 (-) 528 WP_223211305.1 hypothetical protein -
  SYNGTI_RS15210 (SYNGTI_2936) - 3282768..3284885 (-) 2118 WP_010874123.1 TIGR00300 family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25503.81 Da        Isoelectric Point: 8.9103

>NTDB_id=34952 SYNGTI_RS15200 WP_010874121.1 3281184..3281882(+) (recR) [Synechocystis sp. PCC 6803 substr. GT-I]
MGKVAVNSPAHRPLVSTAVYLAPSVKFPLQKRGLGTIYTPPLARLIEQLQRLPSVGPKTAQRLALHLLKRPDAEVENLAQ
ALLDAKKRVGQCQVCFHLSAEPVCDICRHPQRDNSVICVVSDPRDVIALEKTREFRGKYHVLGGVISPMDGIGPEQLTIQ
PLLHRVSQPEIKEVILAISPSVEGETTTLYLGKLLQPFTKVTRIAFGLPMGGDLEYADEVTLARALEGRREL

Nucleotide


Download         Length: 699 bp        

>NTDB_id=34952 SYNGTI_RS15200 WP_010874121.1 3281184..3281882(+) (recR) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGGGGAAGGTGGCTGTCAATTCCCCTGCCCACAGGCCCTTGGTTTCCACGGCTGTTTACTTGGCCCCATCAGTAAAATT
TCCCCTACAAAAGAGAGGTCTTGGCACTATTTATACTCCTCCCCTAGCCCGTCTCATTGAACAATTGCAACGGCTCCCCA
GTGTGGGGCCAAAAACTGCCCAACGTCTTGCCCTGCATCTGCTTAAACGTCCTGATGCGGAGGTGGAGAATTTGGCCCAA
GCCCTCCTCGACGCAAAAAAACGGGTGGGGCAATGCCAAGTATGCTTCCATTTATCCGCTGAGCCTGTCTGTGATATTTG
CCGCCATCCCCAACGGGATAACAGTGTTATCTGTGTGGTCAGTGACCCCAGGGATGTGATTGCGCTGGAAAAAACTAGGG
AATTCCGGGGTAAGTACCATGTGTTGGGCGGGGTAATTTCCCCCATGGACGGCATCGGCCCGGAGCAATTGACCATTCAA
CCCCTATTACATCGGGTTAGTCAGCCAGAAATCAAAGAAGTAATTTTGGCTATTAGTCCTAGTGTGGAGGGGGAAACCAC
CACGTTATATTTGGGCAAACTCCTGCAACCTTTTACCAAGGTTACCCGCATTGCCTTTGGTTTGCCCATGGGAGGGGATT
TGGAATATGCCGATGAAGTTACCCTGGCTAGGGCCTTGGAGGGACGGCGAGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(74-113)

Toprim domain (Toprim_4)

(115-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

84.483

0.457
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

83.621

0.457
  recR Streptococcus pneumoniae R6

45.178

84.914

0.384

Multiple sequence alignment