Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NMO_RS00835 Genome accession   NC_013016
Coordinates   148049..148498 (+) Length   149 a.a.
NCBI ID   WP_002214937.1    Uniprot ID   A0AA44U8B7
Organism   Neisseria meningitidis alpha14     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143049..153498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS14225 (NMO_0149) comE 147497..147961 (+) 465 WP_162470151.1 ComEA family DNA-binding protein Machinery gene
  NMO_RS00835 (NMO_0150) comP 148049..148498 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMO_RS00840 (NMO_0151) - 148588..148982 (-) 395 Protein_157 5'-nucleotidase -
  NMO_RS00845 - 149053..149265 (-) 213 WP_048816032.1 SWIM zinc finger family protein -
  NMO_RS00850 (NMO_0153) - 149558..150613 (+) 1056 WP_002214930.1 DNA cytosine methyltransferase -
  NMO_RS00855 (NMO_0154) - 150627..151805 (+) 1179 WP_232502440.1 ATP-binding protein -
  NMO_RS14590 - 151706..152272 (+) 567 WP_232502441.1 TIGR02391 family protein -
  NMO_RS00860 (NMO_0155) - 152276..152698 (+) 423 WP_002218139.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.81 Da        Isoelectric Point: 9.7951

>NTDB_id=34952 NMO_RS00835 WP_002214937.1 148049..148498(+) (comP) [Neisseria meningitidis alpha14]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=34952 NMO_RS00835 WP_002214937.1 148049..148498(+) (comP) [Neisseria meningitidis alpha14]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

100

100

1
  comP Neisseria meningitidis 8013

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.66

98.658

0.49

Multiple sequence alignment