Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMO_RS14225 Genome accession   NC_013016
Coordinates   147497..147961 (+) Length   154 a.a.
NCBI ID   WP_162470151.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142497..152961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS14225 (NMO_0149) comE 147497..147961 (+) 465 WP_162470151.1 ComEA family DNA-binding protein Machinery gene
  NMO_RS00835 (NMO_0150) comP 148049..148498 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMO_RS00840 (NMO_0151) - 148588..148982 (-) 395 Protein_157 5'-nucleotidase -
  NMO_RS00845 - 149053..149265 (-) 213 WP_048816032.1 SWIM zinc finger family protein -
  NMO_RS00850 (NMO_0153) - 149558..150613 (+) 1056 WP_002214930.1 DNA cytosine methyltransferase -
  NMO_RS00855 (NMO_0154) - 150627..151805 (+) 1179 WP_232502440.1 ATP-binding protein -
  NMO_RS14590 - 151706..152272 (+) 567 WP_232502441.1 TIGR02391 family protein -
  NMO_RS00860 (NMO_0155) - 152276..152698 (+) 423 WP_002218139.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16546.83 Da        Isoelectric Point: 10.8645

>NTDB_id=34993 NMO_RS14225 WP_162470151.1 147497..147961(+) (comE) [Neisseria meningitidis alpha14]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=34993 NMO_RS14225 WP_162470151.1 147497..147961(+) (comE) [Neisseria meningitidis alpha14]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGCGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGCATCGGCCCTGCGGTATTGGCGAAGCTGAAGGACCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment