Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EY713_RS17450 Genome accession   NZ_CP036515
Coordinates   3733208..3733738 (-) Length   176 a.a.
NCBI ID   WP_131117279.1    Uniprot ID   -
Organism   Lichenihabitans psoromatis strain PAMC 29148     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3728208..3738738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EY713_RS17435 - 3729249..3729851 (+) 603 WP_170314088.1 TIGR00730 family Rossman fold protein -
  EY713_RS17440 coaD 3729864..3730373 (-) 510 WP_131117275.1 pantetheine-phosphate adenylyltransferase -
  EY713_RS17445 gyrA 3730373..3733060 (-) 2688 WP_245572768.1 DNA gyrase subunit A -
  EY713_RS17450 ssb 3733208..3733738 (-) 531 WP_131117279.1 single-stranded DNA-binding protein Machinery gene
  EY713_RS17455 uvrA 3734014..3737019 (+) 3006 WP_131117282.1 excinuclease ABC subunit UvrA -
  EY713_RS17460 - 3737407..3737565 (+) 159 WP_131117285.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19026.86 Da        Isoelectric Point: 7.0232

>NTDB_id=349274 EY713_RS17450 WP_131117279.1 3733208..3733738(-) (ssb) [Lichenihabitans psoromatis strain PAMC 29148]
MAGSVNKVTLIGNLGKDPQVRRMNSGEAVVNLTIATSETWRDKASGERKEKTEWHNVVIFNENIAKVAEQYLKKGSKVYV
EGQLQTRKWTDKDGAEKYTTEVVLQRYRGELTLLDSRGSGGDFGGREEGGSFERPSGGGGSGSSYGRSASDQRSSSGPSN
TGGGRLSETIDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=349274 EY713_RS17450 WP_131117279.1 3733208..3733738(-) (ssb) [Lichenihabitans psoromatis strain PAMC 29148]
ATGGCGGGTAGCGTCAACAAGGTGACCCTGATCGGCAATCTCGGCAAGGACCCGCAAGTCCGTCGCATGAATTCGGGTGA
GGCGGTCGTCAATCTGACGATCGCGACGTCCGAAACATGGCGCGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACAACGTCGTGATCTTCAACGAGAATATCGCGAAAGTCGCCGAGCAATATCTGAAGAAGGGCTCGAAGGTCTATGTC
GAGGGACAGTTGCAGACTCGGAAATGGACCGACAAAGATGGTGCCGAAAAATACACGACCGAGGTGGTGCTGCAGCGCTA
TCGCGGTGAACTGACGCTGCTCGATAGCCGCGGGTCTGGCGGTGACTTCGGTGGCCGCGAGGAGGGCGGTTCCTTCGAGC
GCCCGTCTGGCGGGGGCGGCTCAGGGTCCAGCTACGGACGGAGCGCGTCGGACCAACGGTCGAGCAGTGGACCGAGCAAC
ACCGGCGGTGGGCGCTTGTCCGAGACGATCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.506
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.506
  ssb Neisseria meningitidis MC58

42.632

100

0.46
  ssb Neisseria gonorrhoeae MS11

41.579

100

0.449

Multiple sequence alignment