Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EZZ25_RS02390 Genome accession   NZ_CP036499
Coordinates   500213..500857 (+) Length   214 a.a.
NCBI ID   WP_001188315.1    Uniprot ID   -
Organism   Vibrio cholerae strain 20000     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 495213..505857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS02375 (EZZ25_02375) - 495800..497239 (-) 1440 WP_000743255.1 PilN domain-containing protein -
  EZZ25_RS02380 (EZZ25_02380) csrD 497252..499264 (-) 2013 WP_002022932.1 RNase E specificity factor CsrD -
  EZZ25_RS02385 (EZZ25_02385) ssb 499388..499921 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  EZZ25_RS02390 (EZZ25_02390) qstR 500213..500857 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  EZZ25_RS02395 (EZZ25_02395) galU 501030..501902 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EZZ25_RS02400 (EZZ25_02400) uvrA 502058..504880 (+) 2823 WP_000357697.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24708.52 Da        Isoelectric Point: 9.6461

>NTDB_id=349216 EZZ25_RS02390 WP_001188315.1 500213..500857(+) (qstR) [Vibrio cholerae strain 20000]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=349216 EZZ25_RS02390 WP_001188315.1 500213..500857(+) (qstR) [Vibrio cholerae strain 20000]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCAACGGTCGATTTGACTGCACGTGAAATA
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment